miRNA display CGI


Results 81 - 100 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10907 5' -62.4 NC_002794.1 + 112351 0.67 0.599616
Target:  5'- gGCgCCGGCgGCGGGGCGGggagcugcuggaacuCgGCAcGCAGg -3'
miRNA:   3'- -UG-GGCCGgUGCCCUGUC---------------GgUGU-CGUC- -5'
10907 5' -62.4 NC_002794.1 + 127247 0.67 0.599616
Target:  5'- gGCCaCGGCCACGacgacgaccacgaccGcGACGGUCACGGUg- -3'
miRNA:   3'- -UGG-GCCGGUGC---------------C-CUGUCGGUGUCGuc -5'
10907 5' -62.4 NC_002794.1 + 48228 0.67 0.595748
Target:  5'- aGCaggCGGCCGCcaucguuCGGCCGCAGCAGg -3'
miRNA:   3'- -UGg--GCCGGUGcccu---GUCGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 94006 0.67 0.594782
Target:  5'- gGCgCCGGCgGCGGGcCGGCgGguuccgcCGGCGGg -3'
miRNA:   3'- -UG-GGCCGgUGCCCuGUCGgU-------GUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 55288 0.67 0.586096
Target:  5'- --gCGGCgACGaGGGCGGCgGCGGCGu -3'
miRNA:   3'- uggGCCGgUGC-CCUGUCGgUGUCGUc -5'
10907 5' -62.4 NC_002794.1 + 118095 0.67 0.586096
Target:  5'- gGCCUGGaacuCGGGcAgGGCCACGGCGu -3'
miRNA:   3'- -UGGGCCggu-GCCC-UgUCGGUGUCGUc -5'
10907 5' -62.4 NC_002794.1 + 188983 0.67 0.586096
Target:  5'- aGCUCGGCCAC----CAGCCAgCGGCAGc -3'
miRNA:   3'- -UGGGCCGGUGcccuGUCGGU-GUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 45728 0.67 0.586096
Target:  5'- aGCCCGGgcgucuCCACGuagcGCAGCgCGCGGCGGa -3'
miRNA:   3'- -UGGGCC------GGUGCcc--UGUCG-GUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 116947 0.67 0.585132
Target:  5'- cCCCGGCgGCGGcgucGGCgggcgcaggaacgGGCC-CAGCAGg -3'
miRNA:   3'- uGGGCCGgUGCC----CUG-------------UCGGuGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 123680 0.68 0.576474
Target:  5'- gGCCCGGgCugGGaGCAGgCGCgacuGGCGGg -3'
miRNA:   3'- -UGGGCCgGugCCcUGUCgGUG----UCGUC- -5'
10907 5' -62.4 NC_002794.1 + 121792 0.68 0.574553
Target:  5'- cCCCGGCCACcGcGACcggccggcgccuGCCGCuGCAGg -3'
miRNA:   3'- uGGGCCGGUGcC-CUGu-----------CGGUGuCGUC- -5'
10907 5' -62.4 NC_002794.1 + 148130 0.68 0.566887
Target:  5'- -gUCGGgCGCGGGGCcGCCGgGGCGa -3'
miRNA:   3'- ugGGCCgGUGCCCUGuCGGUgUCGUc -5'
10907 5' -62.4 NC_002794.1 + 71413 0.68 0.566887
Target:  5'- -gCCGGCCgucguccaGCGuGGACucguaGGCCGcCAGCAGa -3'
miRNA:   3'- ugGGCCGG--------UGC-CCUG-----UCGGU-GUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 67726 0.68 0.566887
Target:  5'- gGCUCGGUCcCGGcGGCGGCCACccgAGCc- -3'
miRNA:   3'- -UGGGCCGGuGCC-CUGUCGGUG---UCGuc -5'
10907 5' -62.4 NC_002794.1 + 12395 0.68 0.56593
Target:  5'- cGCCUGGCCgacaaccgcACGcGGACGGCgCGCgccgacuGGCAGc -3'
miRNA:   3'- -UGGGCCGG---------UGC-CCUGUCG-GUG-------UCGUC- -5'
10907 5' -62.4 NC_002794.1 + 142902 0.68 0.557341
Target:  5'- uGCCCGGCguccucCGGG--GGCCGgAGCAGg -3'
miRNA:   3'- -UGGGCCGgu----GCCCugUCGGUgUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 181159 0.68 0.557341
Target:  5'- aGCCCGuccGCCGCGccGACGGCgaACGGCGGa -3'
miRNA:   3'- -UGGGC---CGGUGCc-CUGUCGg-UGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 21756 0.68 0.557341
Target:  5'- uCCCu-CCACGGGAUcgagaAGCCACGGCu- -3'
miRNA:   3'- uGGGccGGUGCCCUG-----UCGGUGUCGuc -5'
10907 5' -62.4 NC_002794.1 + 20979 0.68 0.557341
Target:  5'- -aCCGGCagcgGCGGcGGCAGCgacCGCGGCGGc -3'
miRNA:   3'- ugGGCCGg---UGCC-CUGUCG---GUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 55920 0.68 0.557341
Target:  5'- uCUCGGgCACGGucaggaagcGGCAgagguGCCGCAGCAGg -3'
miRNA:   3'- uGGGCCgGUGCC---------CUGU-----CGGUGUCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.