miRNA display CGI


Results 1 - 20 of 202 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10907 5' -62.4 NC_002794.1 + 132 0.71 0.38163
Target:  5'- gACCgGaGCC-CGGGACcGCCGCAGgGGc -3'
miRNA:   3'- -UGGgC-CGGuGCCCUGuCGGUGUCgUC- -5'
10907 5' -62.4 NC_002794.1 + 553 0.73 0.308677
Target:  5'- uGCCCGGCCuCGGcGCGGCgGUGGCAGg -3'
miRNA:   3'- -UGGGCCGGuGCCcUGUCGgUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 2616 0.66 0.682923
Target:  5'- uACCCGGCCGcCGGcGCGcGuCCcCAGCAa -3'
miRNA:   3'- -UGGGCCGGU-GCCcUGU-C-GGuGUCGUc -5'
10907 5' -62.4 NC_002794.1 + 7456 1.07 0.001299
Target:  5'- gACCCGGCCACGGGACAGCCACAGCAGu -3'
miRNA:   3'- -UGGGCCGGUGCCCUGUCGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 12094 0.73 0.31547
Target:  5'- gACCUGGaCCgACGGGAC-GCCGUGGCAGa -3'
miRNA:   3'- -UGGGCC-GG-UGCCCUGuCGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 12395 0.68 0.56593
Target:  5'- cGCCUGGCCgacaaccgcACGcGGACGGCgCGCgccgacuGGCAGc -3'
miRNA:   3'- -UGGGCCGG---------UGC-CCUGUCG-GUG-------UCGUC- -5'
10907 5' -62.4 NC_002794.1 + 13813 0.69 0.51041
Target:  5'- gGCCCGGCCgGCGGcGACGGCCu------ -3'
miRNA:   3'- -UGGGCCGG-UGCC-CUGUCGGugucguc -5'
10907 5' -62.4 NC_002794.1 + 14504 0.67 0.621912
Target:  5'- gGCCCGcGCuCGCGGcGCucguggcgccgcucGGCCACGGCGc -3'
miRNA:   3'- -UGGGC-CG-GUGCCcUG--------------UCGGUGUCGUc -5'
10907 5' -62.4 NC_002794.1 + 14638 0.69 0.501215
Target:  5'- -gCCGGgCACGGaGACGccggcGCCGCGGCGu -3'
miRNA:   3'- ugGGCCgGUGCC-CUGU-----CGGUGUCGUc -5'
10907 5' -62.4 NC_002794.1 + 16810 0.67 0.624824
Target:  5'- cGCCCaGCCGCccccGCcGCCGCAGCAGc -3'
miRNA:   3'- -UGGGcCGGUGccc-UGuCGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 17679 0.69 0.501215
Target:  5'- -gCCGGCCccgGCGGaGACcgAGCCGCAcacGCAGu -3'
miRNA:   3'- ugGGCCGG---UGCC-CUG--UCGGUGU---CGUC- -5'
10907 5' -62.4 NC_002794.1 + 19440 0.69 0.501215
Target:  5'- gACCaGGCCccgaGCGGGcacgagcgGCGGCgGCGGCGGg -3'
miRNA:   3'- -UGGgCCGG----UGCCC--------UGUCGgUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 20624 0.66 0.662662
Target:  5'- uGCCCGGCUcCGGcugccucGACGGCUGguGCGa -3'
miRNA:   3'- -UGGGCCGGuGCC-------CUGUCGGUguCGUc -5'
10907 5' -62.4 NC_002794.1 + 20979 0.68 0.557341
Target:  5'- -aCCGGCagcgGCGGcGGCAGCgacCGCGGCGGc -3'
miRNA:   3'- ugGGCCGg---UGCC-CUGUCG---GUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 21659 0.66 0.682923
Target:  5'- --gCGGCgGCGGuGGCGGCgGCGGUAu -3'
miRNA:   3'- uggGCCGgUGCC-CUGUCGgUGUCGUc -5'
10907 5' -62.4 NC_002794.1 + 21756 0.68 0.557341
Target:  5'- uCCCu-CCACGGGAUcgagaAGCCACGGCu- -3'
miRNA:   3'- uGGGccGGUGCCCUG-----UCGGUGUCGuc -5'
10907 5' -62.4 NC_002794.1 + 21881 0.75 0.219477
Target:  5'- -gCCGGCCGCGGGguguccGCGGCCugcgucgguggugGCGGCGGa -3'
miRNA:   3'- ugGGCCGGUGCCC------UGUCGG-------------UGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 23943 0.74 0.270266
Target:  5'- aGCCCGGCCGCGGcGCacuuggcuccgAGCCAgCGGCGa -3'
miRNA:   3'- -UGGGCCGGUGCCcUG-----------UCGGU-GUCGUc -5'
10907 5' -62.4 NC_002794.1 + 25117 0.67 0.615119
Target:  5'- -aCCGGUCgagaucgaGCGGGGCAcgcGCgCACGGUAGg -3'
miRNA:   3'- ugGGCCGG--------UGCCCUGU---CG-GUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 32869 0.7 0.439106
Target:  5'- -gCCGGCgGgCGGcGGCGGCgGCGGCGGc -3'
miRNA:   3'- ugGGCCGgU-GCC-CUGUCGgUGUCGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.