miRNA display CGI


Results 41 - 60 of 202 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10907 5' -62.4 NC_002794.1 + 47331 0.69 0.519674
Target:  5'- uGCCCGGCUcccGCGGcGGCGGCCucCGGaCGu -3'
miRNA:   3'- -UGGGCCGG---UGCC-CUGUCGGu-GUC-GUc -5'
10907 5' -62.4 NC_002794.1 + 47742 0.67 0.605425
Target:  5'- cGCCgGGuCCACGuGGCGGCCguggucGCGGCAc -3'
miRNA:   3'- -UGGgCC-GGUGCcCUGUCGG------UGUCGUc -5'
10907 5' -62.4 NC_002794.1 + 48075 0.74 0.264251
Target:  5'- -gCCGGCCAgCGGGAgCAGCCGCcGCu- -3'
miRNA:   3'- ugGGCCGGU-GCCCU-GUCGGUGuCGuc -5'
10907 5' -62.4 NC_002794.1 + 48228 0.67 0.595748
Target:  5'- aGCaggCGGCCGCcaucguuCGGCCGCAGCAGg -3'
miRNA:   3'- -UGg--GCCGGUGcccu---GUCGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 48447 0.68 0.538395
Target:  5'- --gCGGCCAuCGGGACAcagccGCCACGuCAGg -3'
miRNA:   3'- uggGCCGGU-GCCCUGU-----CGGUGUcGUC- -5'
10907 5' -62.4 NC_002794.1 + 48633 0.7 0.447715
Target:  5'- --gCGGCCGuCGGGGCccgcgAGCCGCcGCAGa -3'
miRNA:   3'- uggGCCGGU-GCCCUG-----UCGGUGuCGUC- -5'
10907 5' -62.4 NC_002794.1 + 49011 0.73 0.301996
Target:  5'- uCCCGcGCCGCGG--CGGCCGCGGCGu -3'
miRNA:   3'- uGGGC-CGGUGCCcuGUCGGUGUCGUc -5'
10907 5' -62.4 NC_002794.1 + 49399 0.76 0.191079
Target:  5'- cGCCguCGGCCACGG--CGGCCGCGGCGGc -3'
miRNA:   3'- -UGG--GCCGGUGCCcuGUCGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 49517 0.66 0.673291
Target:  5'- cGCCgGGUaCAUGGGuucGCGcGCCGCgAGCAGa -3'
miRNA:   3'- -UGGgCCG-GUGCCC---UGU-CGGUG-UCGUC- -5'
10907 5' -62.4 NC_002794.1 + 52771 0.76 0.205093
Target:  5'- gGCCCgGGCCGCGGGAUcgugacgcucgAGCCGCucgucggacgccGGCAGc -3'
miRNA:   3'- -UGGG-CCGGUGCCCUG-----------UCGGUG------------UCGUC- -5'
10907 5' -62.4 NC_002794.1 + 53768 0.72 0.329392
Target:  5'- -gCCGGCgGCGGGACGcccgcgacgcGCC-CGGCGGg -3'
miRNA:   3'- ugGGCCGgUGCCCUGU----------CGGuGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 54853 0.72 0.336522
Target:  5'- cGCCCguaGGCCgGCGcGGGCcGCCGCAGCGu -3'
miRNA:   3'- -UGGG---CCGG-UGC-CCUGuCGGUGUCGUc -5'
10907 5' -62.4 NC_002794.1 + 54983 0.66 0.682923
Target:  5'- gACCC-GCCGCGGcGACGGCgGCgacucgccgGGCGu -3'
miRNA:   3'- -UGGGcCGGUGCC-CUGUCGgUG---------UCGUc -5'
10907 5' -62.4 NC_002794.1 + 55288 0.67 0.586096
Target:  5'- --gCGGCgACGaGGGCGGCgGCGGCGu -3'
miRNA:   3'- uggGCCGgUGC-CCUGUCGgUGUCGUc -5'
10907 5' -62.4 NC_002794.1 + 55920 0.68 0.557341
Target:  5'- uCUCGGgCACGGucaggaagcGGCAgagguGCCGCAGCAGg -3'
miRNA:   3'- uGGGCCgGUGCC---------CUGU-----CGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 56261 0.7 0.439106
Target:  5'- gGCaCGGCCAcCGGGccgaGCAGCagGCGGCAGa -3'
miRNA:   3'- -UGgGCCGGU-GCCC----UGUCGg-UGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 56580 0.66 0.692517
Target:  5'- cGCCCGcGCCGCGGcGCccGCCGcCGGCc- -3'
miRNA:   3'- -UGGGC-CGGUGCCcUGu-CGGU-GUCGuc -5'
10907 5' -62.4 NC_002794.1 + 58066 0.7 0.455543
Target:  5'- cCCCGGCgGCGgcgggacGGGCGGCC-CGGCGc -3'
miRNA:   3'- uGGGCCGgUGC-------CCUGUCGGuGUCGUc -5'
10907 5' -62.4 NC_002794.1 + 58515 0.66 0.673291
Target:  5'- uGCUCGuCCACGGGcACGccgaggccuucGCCGCGGCGc -3'
miRNA:   3'- -UGGGCcGGUGCCC-UGU-----------CGGUGUCGUc -5'
10907 5' -62.4 NC_002794.1 + 60589 0.67 0.634535
Target:  5'- cGCCgGGCCugcuggaGGcGCAGCagcaACAGCAGa -3'
miRNA:   3'- -UGGgCCGGug-----CCcUGUCGg---UGUCGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.