Results 61 - 80 of 202 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10907 | 5' | -62.4 | NC_002794.1 | + | 60637 | 0.67 | 0.634535 |
Target: 5'- gACCCGGCgCcgGCGGcGcCGGCCACccGGCGc -3' miRNA: 3'- -UGGGCCG-G--UGCC-CuGUCGGUG--UCGUc -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 63446 | 0.67 | 0.602519 |
Target: 5'- cACCaCGGCCGCGGcGGCgacgaugacgacgaGGCgGCGGCc- -3' miRNA: 3'- -UGG-GCCGGUGCC-CUG--------------UCGgUGUCGuc -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 65220 | 0.67 | 0.624824 |
Target: 5'- cGCUCGcauuCCACGGGcgGCGgucGCCGCGGCGGc -3' miRNA: 3'- -UGGGCc---GGUGCCC--UGU---CGGUGUCGUC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 65927 | 0.66 | 0.682923 |
Target: 5'- -gCCGGCgGCGGuGGCGuCgGCGGCGGu -3' miRNA: 3'- ugGGCCGgUGCC-CUGUcGgUGUCGUC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 66007 | 0.66 | 0.644244 |
Target: 5'- uCCCGGCaC-CGaGGCGGCCGCGGUc- -3' miRNA: 3'- uGGGCCG-GuGCcCUGUCGGUGUCGuc -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 66714 | 0.69 | 0.516888 |
Target: 5'- cGCCCGG-CACGGccgccgccaccgccGGCGGUgGCGGCGGc -3' miRNA: 3'- -UGGGCCgGUGCC--------------CUGUCGgUGUCGUC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 67726 | 0.68 | 0.566887 |
Target: 5'- gGCUCGGUCcCGGcGGCGGCCACccgAGCc- -3' miRNA: 3'- -UGGGCCGGuGCC-CUGUCGGUG---UCGuc -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 67929 | 0.69 | 0.474087 |
Target: 5'- cCCCGaGCgACGGGGCgauGGCCucgaccgaggACGGCGGg -3' miRNA: 3'- uGGGC-CGgUGCCCUG---UCGG----------UGUCGUC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 68761 | 0.67 | 0.605425 |
Target: 5'- aGCCgGGCCGcCGGGGCGccggacGCC-CGGCu- -3' miRNA: 3'- -UGGgCCGGU-GCCCUGU------CGGuGUCGuc -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 69192 | 0.69 | 0.51041 |
Target: 5'- uUCCGGCaCGCGGcccGCAGCUuggcCAGCAGa -3' miRNA: 3'- uGGGCCG-GUGCCc--UGUCGGu---GUCGUC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 70057 | 0.79 | 0.129772 |
Target: 5'- cGCCCGGUCGgGcGGccGCAGCCGCAGCAa -3' miRNA: 3'- -UGGGCCGGUgC-CC--UGUCGGUGUCGUc -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 70218 | 0.69 | 0.483051 |
Target: 5'- cGCCCGGaCgGuCGGGcggGCGGCCggccgccccGCAGCAGa -3' miRNA: 3'- -UGGGCC-GgU-GCCC---UGUCGG---------UGUCGUC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 70655 | 0.69 | 0.51041 |
Target: 5'- uCuuGGCCucgugcGCGGcGGCcGCCGCGGCGGu -3' miRNA: 3'- uGggCCGG------UGCC-CUGuCGGUGUCGUC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 70859 | 0.69 | 0.48215 |
Target: 5'- -gCCGGCCuccuccgGCGGcGGCAGCgGCGGCu- -3' miRNA: 3'- ugGGCCGG-------UGCC-CUGUCGgUGUCGuc -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 71224 | 0.7 | 0.456417 |
Target: 5'- uCCCGGCCGCGuaguGGCGGCCGgcguggacCGGCAc -3' miRNA: 3'- uGGGCCGGUGCc---CUGUCGGU--------GUCGUc -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 71413 | 0.68 | 0.566887 |
Target: 5'- -gCCGGCCgucguccaGCGuGGACucguaGGCCGcCAGCAGa -3' miRNA: 3'- ugGGCCGG--------UGC-CCUG-----UCGGU-GUCGUC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 72464 | 0.67 | 0.633564 |
Target: 5'- cGCCCGGCCccGCGGcggcgccgaaaaGACgaucacgcagucgGGCaCGCGGCAGc -3' miRNA: 3'- -UGGGCCGG--UGCC------------CUG-------------UCG-GUGUCGUC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 74080 | 0.71 | 0.373838 |
Target: 5'- gGCCCuccucGCCGaguCGGGACAGCUGCGGCu- -3' miRNA: 3'- -UGGGc----CGGU---GCCCUGUCGGUGUCGuc -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 75370 | 0.69 | 0.492094 |
Target: 5'- gACCC-GCCGCGGccGGCGGCgGCGGCc- -3' miRNA: 3'- -UGGGcCGGUGCC--CUGUCGgUGUCGuc -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 79431 | 0.74 | 0.246858 |
Target: 5'- gGCCCGGCgGCGGcGGCGGCgACcggcGCGGa -3' miRNA: 3'- -UGGGCCGgUGCC-CUGUCGgUGu---CGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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