miRNA display CGI


Results 81 - 100 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10907 5' -62.4 NC_002794.1 + 80407 0.72 0.328685
Target:  5'- cGCCgCGGCCcagguggcgccggGCGGGGCcGCCGcCGGCGGc -3'
miRNA:   3'- -UGG-GCCGG-------------UGCCCUGuCGGU-GUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 82029 0.7 0.447715
Target:  5'- aACCCGacgaUCGCGuGGGCGGCgGCGGCGGc -3'
miRNA:   3'- -UGGGCc---GGUGC-CCUGUCGgUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 82360 0.69 0.519674
Target:  5'- cGCCCGuccucGCCGCccGACAccGCCGCGGCGGa -3'
miRNA:   3'- -UGGGC-----CGGUGccCUGU--CGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 83029 0.7 0.422177
Target:  5'- uCCCGGCgC-CGGGcgGCAcCCACGGCGGa -3'
miRNA:   3'- uGGGCCG-GuGCCC--UGUcGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 85543 0.66 0.643273
Target:  5'- cGCCCaacauGGCCcCGGGACGgcuuccuGCCACGcGCGa -3'
miRNA:   3'- -UGGG-----CCGGuGCCCUGU-------CGGUGU-CGUc -5'
10907 5' -62.4 NC_002794.1 + 85953 0.66 0.662662
Target:  5'- gACCCggaacggGGCCGCGgcccucucaucGGACcGCCGCGGCc- -3'
miRNA:   3'- -UGGG-------CCGGUGC-----------CCUGuCGGUGUCGuc -5'
10907 5' -62.4 NC_002794.1 + 86852 0.66 0.692517
Target:  5'- gGCCCcGCCGggauUGGGuCuGCCGCGGCuAGg -3'
miRNA:   3'- -UGGGcCGGU----GCCCuGuCGGUGUCG-UC- -5'
10907 5' -62.4 NC_002794.1 + 86913 0.68 0.529005
Target:  5'- gACCCGGUgACGcccguggcGGGCAGgCGgGGCGGg -3'
miRNA:   3'- -UGGGCCGgUGC--------CCUGUCgGUgUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 87309 0.67 0.615119
Target:  5'- uACCCGGUaGCGGuccccaggucCAGCgGCGGCAGg -3'
miRNA:   3'- -UGGGCCGgUGCCcu--------GUCGgUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 88969 0.71 0.38163
Target:  5'- aGCgUGGCCGCcGGAUcGUCGCGGCAGa -3'
miRNA:   3'- -UGgGCCGGUGcCCUGuCGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 90568 0.66 0.673291
Target:  5'- uACCCGGCgGCGGGuccCGGgCGCucCAGu -3'
miRNA:   3'- -UGGGCCGgUGCCCu--GUCgGUGucGUC- -5'
10907 5' -62.4 NC_002794.1 + 90676 0.68 0.547843
Target:  5'- -gCCGGCCGCGuGGCuguucguguGcCCGCGGCAGg -3'
miRNA:   3'- ugGGCCGGUGCcCUGu--------C-GGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 91192 0.69 0.519674
Target:  5'- uACCCGGCgACGcuguucgcGGACGGCgACgcgacGGCGGa -3'
miRNA:   3'- -UGGGCCGgUGC--------CCUGUCGgUG-----UCGUC- -5'
10907 5' -62.4 NC_002794.1 + 91871 0.68 0.547843
Target:  5'- uCCCgggGGUgGCGGcGGCGGCCGCgacgAGCAGu -3'
miRNA:   3'- uGGG---CCGgUGCC-CUGUCGGUG----UCGUC- -5'
10907 5' -62.4 NC_002794.1 + 91980 0.74 0.264251
Target:  5'- cGCCUGGCCaucuacaacACGGGGCAGaaCgGCGGCAGc -3'
miRNA:   3'- -UGGGCCGG---------UGCCCUGUC--GgUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 93827 0.72 0.336522
Target:  5'- aGCUggCGGCCAuCGccgagaucauGGACGGCCGCGGCGGc -3'
miRNA:   3'- -UGG--GCCGGU-GC----------CCUGUCGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 94006 0.67 0.594782
Target:  5'- gGCgCCGGCgGCGGGcCGGCgGguuccgcCGGCGGg -3'
miRNA:   3'- -UG-GGCCGgUGCCCuGUCGgU-------GUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 94193 0.66 0.702066
Target:  5'- uUCCGGCCaaGCGGuugcgcuuguGACGGUgGCGGCGa -3'
miRNA:   3'- uGGGCCGG--UGCC----------CUGUCGgUGUCGUc -5'
10907 5' -62.4 NC_002794.1 + 95770 0.66 0.644244
Target:  5'- --gCGGCCGCGacGGCGGCCGgGGCGa -3'
miRNA:   3'- uggGCCGGUGCc-CUGUCGGUgUCGUc -5'
10907 5' -62.4 NC_002794.1 + 95826 0.71 0.366154
Target:  5'- --gCGGCCGgGGGAgCGGCgGCGGCGGc -3'
miRNA:   3'- uggGCCGGUgCCCU-GUCGgUGUCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.