miRNA display CGI


Results 21 - 40 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10907 5' -62.4 NC_002794.1 + 184960 0.69 0.474087
Target:  5'- gGCCCGcgcaGCCGCucgucGGGCAGCaCGCAGCGc -3'
miRNA:   3'- -UGGGC----CGGUGc----CCUGUCG-GUGUCGUc -5'
10907 5' -62.4 NC_002794.1 + 184596 0.79 0.126303
Target:  5'- cGCgCGGCCGCGGGAucggcaaCGGCCAgCGGCAGc -3'
miRNA:   3'- -UGgGCCGGUGCCCU-------GUCGGU-GUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 184326 0.67 0.615119
Target:  5'- cGCUcaCGGCCG-GGGACAGCgACAGgGu -3'
miRNA:   3'- -UGG--GCCGGUgCCCUGUCGgUGUCgUc -5'
10907 5' -62.4 NC_002794.1 + 184048 0.69 0.474087
Target:  5'- cGCgCGGUCGCGGGccGCGGCgaaGCGGCAc -3'
miRNA:   3'- -UGgGCCGGUGCCC--UGUCGg--UGUCGUc -5'
10907 5' -62.4 NC_002794.1 + 183504 0.66 0.692517
Target:  5'- aACCCGGCCcCGaGACccauGUCGCGGCc- -3'
miRNA:   3'- -UGGGCCGGuGCcCUGu---CGGUGUCGuc -5'
10907 5' -62.4 NC_002794.1 + 182208 0.79 0.129772
Target:  5'- gGCgUCGcGCCACGGGGCuccgacggucaGGCCGCAGCAGg -3'
miRNA:   3'- -UG-GGC-CGGUGCCCUG-----------UCGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 181384 0.72 0.343763
Target:  5'- gGCCCGGCCGucaguucgccCGGGcCGGCCGCcGCc- -3'
miRNA:   3'- -UGGGCCGGU----------GCCCuGUCGGUGuCGuc -5'
10907 5' -62.4 NC_002794.1 + 181159 0.68 0.557341
Target:  5'- aGCCCGuccGCCGCGccGACGGCgaACGGCGGa -3'
miRNA:   3'- -UGGGC---CGGUGCc-CUGUCGg-UGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 180896 0.72 0.336522
Target:  5'- uCUCGGCCGCGGacuCGGCCGCGGUc- -3'
miRNA:   3'- uGGGCCGGUGCCcu-GUCGGUGUCGuc -5'
10907 5' -62.4 NC_002794.1 + 180605 0.66 0.663629
Target:  5'- cCUCGcGCCGCGGGcCAcGaCACGGCGGc -3'
miRNA:   3'- uGGGC-CGGUGCCCuGU-CgGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 180009 0.84 0.055078
Target:  5'- gGCCCGGCCACGacGACGGCCGCGGCc- -3'
miRNA:   3'- -UGGGCCGGUGCc-CUGUCGGUGUCGuc -5'
10907 5' -62.4 NC_002794.1 + 179677 0.7 0.430593
Target:  5'- cACCC-GCgGCGGcGACGGUgGCGGCGGc -3'
miRNA:   3'- -UGGGcCGgUGCC-CUGUCGgUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 156409 0.72 0.322375
Target:  5'- cGCCgCGGCCGCGGccACGGCCgGCGGguGa -3'
miRNA:   3'- -UGG-GCCGGUGCCc-UGUCGG-UGUCguC- -5'
10907 5' -62.4 NC_002794.1 + 154346 0.69 0.519674
Target:  5'- uGCCgCGGCCgagcucccgcGCGGucCAgGCCGCGGCGGc -3'
miRNA:   3'- -UGG-GCCGG----------UGCCcuGU-CGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 151581 0.66 0.702066
Target:  5'- cCCCGGCgGCGcGcGCcGCCGCcGCGGg -3'
miRNA:   3'- uGGGCCGgUGC-CcUGuCGGUGuCGUC- -5'
10907 5' -62.4 NC_002794.1 + 150029 0.66 0.692517
Target:  5'- gACCCGGCCGCcGaGugGaGCCGCuaccgacuGCGGu -3'
miRNA:   3'- -UGGGCCGGUGcC-CugU-CGGUGu-------CGUC- -5'
10907 5' -62.4 NC_002794.1 + 149692 0.73 0.31547
Target:  5'- -aCUGGCCGCGGG--GGCCGCcuGGCGGg -3'
miRNA:   3'- ugGGCCGGUGCCCugUCGGUG--UCGUC- -5'
10907 5' -62.4 NC_002794.1 + 148130 0.68 0.566887
Target:  5'- -gUCGGgCGCGGGGCcGCCGgGGCGa -3'
miRNA:   3'- ugGGCCgGUGCCCUGuCGGUgUCGUc -5'
10907 5' -62.4 NC_002794.1 + 147427 0.66 0.673291
Target:  5'- uACCCGcuGCUGCuGGACGGCUACgGGCGc -3'
miRNA:   3'- -UGGGC--CGGUGcCCUGUCGGUG-UCGUc -5'
10907 5' -62.4 NC_002794.1 + 146996 0.69 0.48215
Target:  5'- -gCCGGCCgacgucgGCGGcGGCGGCCGcCGGCGc -3'
miRNA:   3'- ugGGCCGG-------UGCC-CUGUCGGU-GUCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.