miRNA display CGI


Results 41 - 60 of 202 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10907 5' -62.4 NC_002794.1 + 145114 0.69 0.51041
Target:  5'- uACgCGGUguCGGGGCAGCUcauGCuGCGGg -3'
miRNA:   3'- -UGgGCCGguGCCCUGUCGG---UGuCGUC- -5'
10907 5' -62.4 NC_002794.1 + 144091 0.66 0.652975
Target:  5'- gGCCUGGCUgucccgcuugugcGCccuGGGGCAcuacGCCACGGCGu -3'
miRNA:   3'- -UGGGCCGG-------------UG---CCCUGU----CGGUGUCGUc -5'
10907 5' -62.4 NC_002794.1 + 143851 0.66 0.702066
Target:  5'- cUCCGGCCA-GGcGAUcGCCGCcGCGGc -3'
miRNA:   3'- uGGGCCGGUgCC-CUGuCGGUGuCGUC- -5'
10907 5' -62.4 NC_002794.1 + 143270 0.74 0.27639
Target:  5'- gGCCCGGCC-CGGcGcCGGCCGCucggggucgGGCGGg -3'
miRNA:   3'- -UGGGCCGGuGCC-CuGUCGGUG---------UCGUC- -5'
10907 5' -62.4 NC_002794.1 + 142902 0.68 0.557341
Target:  5'- uGCCCGGCguccucCGGG--GGCCGgAGCAGg -3'
miRNA:   3'- -UGGGCCGgu----GCCCugUCGGUgUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 142195 0.66 0.644244
Target:  5'- --gCGGCaguGCGGGaaGCGGCgGCGGCAGc -3'
miRNA:   3'- uggGCCGg--UGCCC--UGUCGgUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 142141 0.68 0.538395
Target:  5'- cGCCgGGUCACGGcGGaGGCgGCGGUAGc -3'
miRNA:   3'- -UGGgCCGGUGCC-CUgUCGgUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 141619 0.66 0.667497
Target:  5'- -aCCGGCUcgcggucuagcgACGGGaaggccggcguggccGCGGCCGcCGGCGGg -3'
miRNA:   3'- ugGGCCGG------------UGCCC---------------UGUCGGU-GUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 141593 0.67 0.634535
Target:  5'- cGCCCGcGUCGCcGGGCGGCU-CGGCGa -3'
miRNA:   3'- -UGGGC-CGGUGcCCUGUCGGuGUCGUc -5'
10907 5' -62.4 NC_002794.1 + 139891 0.66 0.682923
Target:  5'- uCUCGGUgaUGCGGGcCAGCCGCAGg-- -3'
miRNA:   3'- uGGGCCG--GUGCCCuGUCGGUGUCguc -5'
10907 5' -62.4 NC_002794.1 + 138747 0.73 0.31547
Target:  5'- cCCCGGCCcuccgGGGGCcgAGUCGCGGCGGu -3'
miRNA:   3'- uGGGCCGGug---CCCUG--UCGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 134167 0.7 0.422177
Target:  5'- gGCCgUGGCCGCGcGGAUGGCCACcucguaucggcuGGUGGg -3'
miRNA:   3'- -UGG-GCCGGUGC-CCUGUCGGUG------------UCGUC- -5'
10907 5' -62.4 NC_002794.1 + 133519 0.66 0.670396
Target:  5'- gACCUGGCCGuugaguuggccgacCGGGuACGcguugugcaccGUCACGGCGGa -3'
miRNA:   3'- -UGGGCCGGU--------------GCCC-UGU-----------CGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 131243 0.66 0.653945
Target:  5'- gACCCcGCCGCcGGAC-GCCGcCGGCAc -3'
miRNA:   3'- -UGGGcCGGUGcCCUGuCGGU-GUCGUc -5'
10907 5' -62.4 NC_002794.1 + 130665 0.74 0.264251
Target:  5'- -gCCGGCCGCGGG-CuccGCCGCGGCc- -3'
miRNA:   3'- ugGGCCGGUGCCCuGu--CGGUGUCGuc -5'
10907 5' -62.4 NC_002794.1 + 129927 0.73 0.301996
Target:  5'- cGCCaGGCCGUGGcGACGGCgGCGGCGGc -3'
miRNA:   3'- -UGGgCCGGUGCC-CUGUCGgUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 129187 0.67 0.634535
Target:  5'- -aUCGGCCucCGGGucgacgaccgaGCGGCCgACGGCGGu -3'
miRNA:   3'- ugGGCCGGu-GCCC-----------UGUCGG-UGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 128665 0.7 0.413861
Target:  5'- -aCCGGCCGCGcGAauaaucGCCGCGGCGGu -3'
miRNA:   3'- ugGGCCGGUGCcCUgu----CGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 127354 0.66 0.681961
Target:  5'- cGCUcgCGGCgGCGGcGCGGCCGCucgugucGGCGGa -3'
miRNA:   3'- -UGG--GCCGgUGCCcUGUCGGUG-------UCGUC- -5'
10907 5' -62.4 NC_002794.1 + 127247 0.67 0.599616
Target:  5'- gGCCaCGGCCACGacgacgaccacgaccGcGACGGUCACGGUg- -3'
miRNA:   3'- -UGG-GCCGGUGC---------------C-CUGUCGGUGUCGuc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.