miRNA display CGI


Results 61 - 80 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10907 5' -62.4 NC_002794.1 + 127174 0.73 0.31138
Target:  5'- cACCCucgccgcagucgucGCCGCGGccGCAGCCGCAGCAGc -3'
miRNA:   3'- -UGGGc-------------CGGUGCCc-UGUCGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 126475 0.66 0.692517
Target:  5'- gACCuUGGCCugGGGACuguugGGCUGC-GCGa -3'
miRNA:   3'- -UGG-GCCGGugCCCUG-----UCGGUGuCGUc -5'
10907 5' -62.4 NC_002794.1 + 125745 0.77 0.177912
Target:  5'- -gCgGGCCGCGGGACGGCgGcCGGCGGc -3'
miRNA:   3'- ugGgCCGGUGCCCUGUCGgU-GUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 125319 0.68 0.538395
Target:  5'- cGCCCGcGCCGagcCGGaGCGcGCCACGGCGc -3'
miRNA:   3'- -UGGGC-CGGU---GCCcUGU-CGGUGUCGUc -5'
10907 5' -62.4 NC_002794.1 + 124405 0.66 0.673291
Target:  5'- -gCCGGUCGuCGGGGCGccguccGCCGCGGUc- -3'
miRNA:   3'- ugGGCCGGU-GCCCUGU------CGGUGUCGuc -5'
10907 5' -62.4 NC_002794.1 + 123993 0.66 0.702066
Target:  5'- gGCgCCGGUCaucuacgugaaGCGGG-CGGCCGCGGaAGa -3'
miRNA:   3'- -UG-GGCCGG-----------UGCCCuGUCGGUGUCgUC- -5'
10907 5' -62.4 NC_002794.1 + 123680 0.68 0.576474
Target:  5'- gGCCCGGgCugGGaGCAGgCGCgacuGGCGGg -3'
miRNA:   3'- -UGGGCCgGugCCcUGUCgGUG----UCGUC- -5'
10907 5' -62.4 NC_002794.1 + 123360 0.71 0.38953
Target:  5'- -aCCGGCCGCucuGcGugGGCUACAGCGGu -3'
miRNA:   3'- ugGGCCGGUGc--C-CugUCGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 121792 0.68 0.574553
Target:  5'- cCCCGGCCACcGcGACcggccggcgccuGCCGCuGCAGg -3'
miRNA:   3'- uGGGCCGGUGcC-CUGu-----------CGGUGuCGUC- -5'
10907 5' -62.4 NC_002794.1 + 120973 0.7 0.419672
Target:  5'- gGCCCGGCCugcgaguucguguaGCGGcGGCGgGCCAUGGCc- -3'
miRNA:   3'- -UGGGCCGG--------------UGCC-CUGU-CGGUGUCGuc -5'
10907 5' -62.4 NC_002794.1 + 120050 0.69 0.51041
Target:  5'- --aCGGCgGCGGuGGCGGCCGCGG-AGg -3'
miRNA:   3'- uggGCCGgUGCC-CUGUCGGUGUCgUC- -5'
10907 5' -62.4 NC_002794.1 + 119693 0.7 0.430593
Target:  5'- cUCCGGCUGCuGGGccgGCGGCCACaacGGCGGc -3'
miRNA:   3'- uGGGCCGGUG-CCC---UGUCGGUG---UCGUC- -5'
10907 5' -62.4 NC_002794.1 + 119132 0.67 0.605425
Target:  5'- gGCCUGGCaggcguuCGGGugGuCgCGCAGCAGg -3'
miRNA:   3'- -UGGGCCGgu-----GCCCugUcG-GUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 118210 0.66 0.663629
Target:  5'- -gCCGucGCCuCGcGGACGGCCAC-GCAGc -3'
miRNA:   3'- ugGGC--CGGuGC-CCUGUCGGUGuCGUC- -5'
10907 5' -62.4 NC_002794.1 + 118095 0.67 0.586096
Target:  5'- gGCCUGGaacuCGGGcAgGGCCACGGCGu -3'
miRNA:   3'- -UGGGCCggu-GCCC-UgUCGGUGUCGUc -5'
10907 5' -62.4 NC_002794.1 + 117982 0.68 0.547843
Target:  5'- aGCUggUGGUacaGCaGGGGCuGCCGCGGCAGg -3'
miRNA:   3'- -UGG--GCCGg--UG-CCCUGuCGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 117262 0.67 0.624824
Target:  5'- gGCCuCGGCCagacacuccGCGacgcccugcgcGGACAGCUGCGGCGu -3'
miRNA:   3'- -UGG-GCCGG---------UGC-----------CCUGUCGGUGUCGUc -5'
10907 5' -62.4 NC_002794.1 + 117064 0.68 0.547843
Target:  5'- gUCCGugaGCCuCGGGuACGGCgGCAGCGGc -3'
miRNA:   3'- uGGGC---CGGuGCCC-UGUCGgUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 116947 0.67 0.585132
Target:  5'- cCCCGGCgGCGGcgucGGCgggcgcaggaacgGGCC-CAGCAGg -3'
miRNA:   3'- uGGGCCGgUGCC----CUG-------------UCGGuGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 116126 0.72 0.343763
Target:  5'- gUCC-GCCGCGGcGGCGGCgGCGGCGGc -3'
miRNA:   3'- uGGGcCGGUGCC-CUGUCGgUGUCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.