miRNA display CGI


Results 41 - 60 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10907 5' -62.4 NC_002794.1 + 186880 0.66 0.702066
Target:  5'- gGCUCGGCuCGCGGucCGGCguCcGCAGg -3'
miRNA:   3'- -UGGGCCG-GUGCCcuGUCGguGuCGUC- -5'
10907 5' -62.4 NC_002794.1 + 111321 0.66 0.702066
Target:  5'- cGCCgGGCCAgCGGcGCGgGCCGCAGa-- -3'
miRNA:   3'- -UGGgCCGGU-GCCcUGU-CGGUGUCguc -5'
10907 5' -62.4 NC_002794.1 + 41758 0.66 0.702066
Target:  5'- aGCCCGcuuCCACGGaGAuCAGCC-CGGCc- -3'
miRNA:   3'- -UGGGCc--GGUGCC-CU-GUCGGuGUCGuc -5'
10907 5' -62.4 NC_002794.1 + 151581 0.66 0.702066
Target:  5'- cCCCGGCgGCGcGcGCcGCCGCcGCGGg -3'
miRNA:   3'- uGGGCCGgUGC-CcUGuCGGUGuCGUC- -5'
10907 5' -62.4 NC_002794.1 + 123993 0.66 0.702066
Target:  5'- gGCgCCGGUCaucuacgugaaGCGGG-CGGCCGCGGaAGa -3'
miRNA:   3'- -UG-GGCCGG-----------UGCCCuGUCGGUGUCgUC- -5'
10907 5' -62.4 NC_002794.1 + 150029 0.66 0.692517
Target:  5'- gACCCGGCCGCcGaGugGaGCCGCuaccgacuGCGGu -3'
miRNA:   3'- -UGGGCCGGUGcC-CugU-CGGUGu-------CGUC- -5'
10907 5' -62.4 NC_002794.1 + 106367 0.66 0.692517
Target:  5'- gGCgCCGGuUCGCGcGGAgGGCagACGGCGGg -3'
miRNA:   3'- -UG-GGCC-GGUGC-CCUgUCGg-UGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 147427 0.66 0.673291
Target:  5'- uACCCGcuGCUGCuGGACGGCUACgGGCGc -3'
miRNA:   3'- -UGGGC--CGGUGcCCUGUCGGUG-UCGUc -5'
10907 5' -62.4 NC_002794.1 + 188748 0.66 0.673291
Target:  5'- gACCaCGaucaggaacGCCACGuGGaACAGCCcgguGCAGCGGu -3'
miRNA:   3'- -UGG-GC---------CGGUGC-CC-UGUCGG----UGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 188390 0.66 0.673291
Target:  5'- uCCCgGGCUucucgccgcagACGGGACcGCCGCcGCAa -3'
miRNA:   3'- uGGG-CCGG-----------UGCCCUGuCGGUGuCGUc -5'
10907 5' -62.4 NC_002794.1 + 190789 0.66 0.673291
Target:  5'- aACUCGGUC-CGGGACAcGCCGuaacgcgcCAGCu- -3'
miRNA:   3'- -UGGGCCGGuGCCCUGU-CGGU--------GUCGuc -5'
10907 5' -62.4 NC_002794.1 + 21659 0.66 0.682923
Target:  5'- --gCGGCgGCGGuGGCGGCgGCGGUAu -3'
miRNA:   3'- uggGCCGgUGCC-CUGUCGgUGUCGUc -5'
10907 5' -62.4 NC_002794.1 + 127354 0.66 0.681961
Target:  5'- cGCUcgCGGCgGCGGcGCGGCCGCucgugucGGCGGa -3'
miRNA:   3'- -UGG--GCCGgUGCCcUGUCGGUG-------UCGUC- -5'
10907 5' -62.4 NC_002794.1 + 2616 0.66 0.682923
Target:  5'- uACCCGGCCGcCGGcGCGcGuCCcCAGCAa -3'
miRNA:   3'- -UGGGCCGGU-GCCcUGU-C-GGuGUCGUc -5'
10907 5' -62.4 NC_002794.1 + 139891 0.66 0.682923
Target:  5'- uCUCGGUgaUGCGGGcCAGCCGCAGg-- -3'
miRNA:   3'- uGGGCCG--GUGCCCuGUCGGUGUCguc -5'
10907 5' -62.4 NC_002794.1 + 54983 0.66 0.682923
Target:  5'- gACCC-GCCGCGGcGACGGCgGCgacucgccgGGCGu -3'
miRNA:   3'- -UGGGcCGGUGCC-CUGUCGgUG---------UCGUc -5'
10907 5' -62.4 NC_002794.1 + 33451 0.66 0.691559
Target:  5'- gACCucgggCGGCCGCcGGACGcgcccacGCCGCuGCAGc -3'
miRNA:   3'- -UGG-----GCCGGUGcCCUGU-------CGGUGuCGUC- -5'
10907 5' -62.4 NC_002794.1 + 65927 0.66 0.682923
Target:  5'- -gCCGGCgGCGGuGGCGuCgGCGGCGGu -3'
miRNA:   3'- ugGGCCGgUGCC-CUGUcGgUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 126475 0.66 0.692517
Target:  5'- gACCuUGGCCugGGGACuguugGGCUGC-GCGa -3'
miRNA:   3'- -UGG-GCCGGugCCCUG-----UCGGUGuCGUc -5'
10907 5' -62.4 NC_002794.1 + 35990 0.66 0.692517
Target:  5'- gACCCGGUuuuauuguCGCGGGGCucggGCGGCGGa -3'
miRNA:   3'- -UGGGCCG--------GUGCCCUGucggUGUCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.