Results 61 - 80 of 202 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10907 | 5' | -62.4 | NC_002794.1 | + | 33451 | 0.66 | 0.691559 |
Target: 5'- gACCucgggCGGCCGCcGGACGcgcccacGCCGCuGCAGc -3' miRNA: 3'- -UGG-----GCCGGUGcCCUGU-------CGGUGuCGUC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 54983 | 0.66 | 0.682923 |
Target: 5'- gACCC-GCCGCGGcGACGGCgGCgacucgccgGGCGu -3' miRNA: 3'- -UGGGcCGGUGCC-CUGUCGgUG---------UCGUc -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 90568 | 0.66 | 0.673291 |
Target: 5'- uACCCGGCgGCGGGuccCGGgCGCucCAGu -3' miRNA: 3'- -UGGGCCGgUGCCCu--GUCgGUGucGUC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 133519 | 0.66 | 0.670396 |
Target: 5'- gACCUGGCCGuugaguuggccgacCGGGuACGcguugugcaccGUCACGGCGGa -3' miRNA: 3'- -UGGGCCGGU--------------GCCC-UGU-----------CGGUGUCGUC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 58515 | 0.66 | 0.673291 |
Target: 5'- uGCUCGuCCACGGGcACGccgaggccuucGCCGCGGCGc -3' miRNA: 3'- -UGGGCcGGUGCCC-UGU-----------CGGUGUCGUc -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 141619 | 0.66 | 0.667497 |
Target: 5'- -aCCGGCUcgcggucuagcgACGGGaaggccggcguggccGCGGCCGcCGGCGGg -3' miRNA: 3'- ugGGCCGG------------UGCCC---------------UGUCGGU-GUCGUC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 102707 | 0.66 | 0.663629 |
Target: 5'- gGCCgGGCCGCcGGACGGgCGCGcCAa -3' miRNA: 3'- -UGGgCCGGUGcCCUGUCgGUGUcGUc -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 118210 | 0.66 | 0.663629 |
Target: 5'- -gCCGucGCCuCGcGGACGGCCAC-GCAGc -3' miRNA: 3'- ugGGC--CGGuGC-CCUGUCGGUGuCGUC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 180605 | 0.66 | 0.663629 |
Target: 5'- cCUCGcGCCGCGGGcCAcGaCACGGCGGc -3' miRNA: 3'- uGGGC-CGGUGCCCuGU-CgGUGUCGUC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 101586 | 0.66 | 0.663629 |
Target: 5'- cGCCgCGGCCGgGGGGgcgggugcCGGCCcGCcgGGCGGg -3' miRNA: 3'- -UGG-GCCGGUgCCCU--------GUCGG-UG--UCGUC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 124405 | 0.66 | 0.673291 |
Target: 5'- -gCCGGUCGuCGGGGCGccguccGCCGCGGUc- -3' miRNA: 3'- ugGGCCGGU-GCCCUGU------CGGUGUCGuc -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 49517 | 0.66 | 0.673291 |
Target: 5'- cGCCgGGUaCAUGGGuucGCGcGCCGCgAGCAGa -3' miRNA: 3'- -UGGgCCG-GUGCCC---UGU-CGGUG-UCGUC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 139891 | 0.66 | 0.682923 |
Target: 5'- uCUCGGUgaUGCGGGcCAGCCGCAGg-- -3' miRNA: 3'- uGGGCCG--GUGCCCuGUCGGUGUCguc -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 2616 | 0.66 | 0.682923 |
Target: 5'- uACCCGGCCGcCGGcGCGcGuCCcCAGCAa -3' miRNA: 3'- -UGGGCCGGU-GCCcUGU-C-GGuGUCGUc -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 127354 | 0.66 | 0.681961 |
Target: 5'- cGCUcgCGGCgGCGGcGCGGCCGCucgugucGGCGGa -3' miRNA: 3'- -UGG--GCCGgUGCCcUGUCGGUG-------UCGUC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 21659 | 0.66 | 0.682923 |
Target: 5'- --gCGGCgGCGGuGGCGGCgGCGGUAu -3' miRNA: 3'- uggGCCGgUGCC-CUGUCGgUGUCGUc -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 190789 | 0.66 | 0.673291 |
Target: 5'- aACUCGGUC-CGGGACAcGCCGuaacgcgcCAGCu- -3' miRNA: 3'- -UGGGCCGGuGCCCUGU-CGGU--------GUCGuc -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 188390 | 0.66 | 0.673291 |
Target: 5'- uCCCgGGCUucucgccgcagACGGGACcGCCGCcGCAa -3' miRNA: 3'- uGGG-CCGG-----------UGCCCUGuCGGUGuCGUc -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 188748 | 0.66 | 0.673291 |
Target: 5'- gACCaCGaucaggaacGCCACGuGGaACAGCCcgguGCAGCGGu -3' miRNA: 3'- -UGG-GC---------CGGUGC-CC-UGUCGG----UGUCGUC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 147427 | 0.66 | 0.673291 |
Target: 5'- uACCCGcuGCUGCuGGACGGCUACgGGCGc -3' miRNA: 3'- -UGGGC--CGGUGcCCUGUCGGUG-UCGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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