Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10908 | 3' | -61.4 | NC_002794.1 | + | 14504 | 0.66 | 0.776646 |
Target: 5'- gGCCCgcgCUCGcGgcgCUCGuGGCgccgcucggccacggCGCUCUCg -3' miRNA: 3'- -UGGGa--GAGC-Ca--GAGC-CCGa--------------GCGAGGG- -5' |
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10908 | 3' | -61.4 | NC_002794.1 | + | 50968 | 0.66 | 0.764257 |
Target: 5'- cACCCUCUCGGcguacgcaaagauaUCuUCGGcGCUcucguaCGCgaUCCCc -3' miRNA: 3'- -UGGGAGAGCC--------------AG-AGCC-CGA------GCG--AGGG- -5' |
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10908 | 3' | -61.4 | NC_002794.1 | + | 150975 | 0.66 | 0.757984 |
Target: 5'- uGCCCUCggcCGGUCUggacgaCGaGCUCGC-CCg -3' miRNA: 3'- -UGGGAGa--GCCAGA------GCcCGAGCGaGGg -5' |
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10908 | 3' | -61.4 | NC_002794.1 | + | 66375 | 0.66 | 0.748939 |
Target: 5'- cGCCgCUCUC-GUCgaacgCGGGCUcccCGUcgUCCCg -3' miRNA: 3'- -UGG-GAGAGcCAGa----GCCCGA---GCG--AGGG- -5' |
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10908 | 3' | -61.4 | NC_002794.1 | + | 56510 | 0.66 | 0.748939 |
Target: 5'- gGCCC-CgCGGgcgCUcCGGcGCUCGUUCCg -3' miRNA: 3'- -UGGGaGaGCCa--GA-GCC-CGAGCGAGGg -5' |
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10908 | 3' | -61.4 | NC_002794.1 | + | 187892 | 0.66 | 0.748939 |
Target: 5'- uACCCUCUCGcg--CGGuGC-CGCUCgCCc -3' miRNA: 3'- -UGGGAGAGCcagaGCC-CGaGCGAG-GG- -5' |
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10908 | 3' | -61.4 | NC_002794.1 | + | 18315 | 0.66 | 0.739804 |
Target: 5'- gGCCCUCUaCGGUCUCuuguGGUugugcgUCGCgaUCCg -3' miRNA: 3'- -UGGGAGA-GCCAGAGc---CCG------AGCG--AGGg -5' |
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10908 | 3' | -61.4 | NC_002794.1 | + | 195123 | 0.66 | 0.730585 |
Target: 5'- cGCCCg--CGGcgCgcgCGGGCUCGCguacaCCa -3' miRNA: 3'- -UGGGagaGCCa-Ga--GCCCGAGCGag---GG- -5' |
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10908 | 3' | -61.4 | NC_002794.1 | + | 85517 | 0.66 | 0.730585 |
Target: 5'- cCCCUUUCGGcCUCGccccgcGGCUC-CgCCCa -3' miRNA: 3'- uGGGAGAGCCaGAGC------CCGAGcGaGGG- -5' |
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10908 | 3' | -61.4 | NC_002794.1 | + | 82082 | 0.67 | 0.721291 |
Target: 5'- gGCCCUCUCGGgcaccccgacCUCGucuGC-CGCcCCCg -3' miRNA: 3'- -UGGGAGAGCCa---------GAGCc--CGaGCGaGGG- -5' |
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10908 | 3' | -61.4 | NC_002794.1 | + | 78459 | 0.67 | 0.711929 |
Target: 5'- cGCUCgcggUCUCGGUCaUCaGGCgcaCGCUCUCc -3' miRNA: 3'- -UGGG----AGAGCCAG-AGcCCGa--GCGAGGG- -5' |
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10908 | 3' | -61.4 | NC_002794.1 | + | 177587 | 0.67 | 0.710989 |
Target: 5'- gACUCgaaggCUCGGcggagcCUCGGGUcggucgaUCGCUCCUc -3' miRNA: 3'- -UGGGa----GAGCCa-----GAGCCCG-------AGCGAGGG- -5' |
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10908 | 3' | -61.4 | NC_002794.1 | + | 113799 | 0.67 | 0.692082 |
Target: 5'- cGCgCUCUCGGUCcucgccuUCGcGGCggCGCUCggCCu -3' miRNA: 3'- -UGgGAGAGCCAG-------AGC-CCGa-GCGAG--GG- -5' |
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10908 | 3' | -61.4 | NC_002794.1 | + | 22359 | 0.67 | 0.683512 |
Target: 5'- cCCCUCUcccgcucacccCGGUCccgauccggUCGGGCgUCGuCUCCg -3' miRNA: 3'- uGGGAGA-----------GCCAG---------AGCCCG-AGC-GAGGg -5' |
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10908 | 3' | -61.4 | NC_002794.1 | + | 70218 | 0.67 | 0.673954 |
Target: 5'- cGCCCggaCGGUCgggCGGGCggccggcCGC-CCCg -3' miRNA: 3'- -UGGGagaGCCAGa--GCCCGa------GCGaGGG- -5' |
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10908 | 3' | -61.4 | NC_002794.1 | + | 182632 | 0.67 | 0.673954 |
Target: 5'- cGCCgUCcagCGccGUCUCcuGGGCUCGCaCCCa -3' miRNA: 3'- -UGGgAGa--GC--CAGAG--CCCGAGCGaGGG- -5' |
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10908 | 3' | -61.4 | NC_002794.1 | + | 922 | 0.68 | 0.625854 |
Target: 5'- cGCCUUCUuuUGGUUUCGGaUUCGCUUUCg -3' miRNA: 3'- -UGGGAGA--GCCAGAGCCcGAGCGAGGG- -5' |
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10908 | 3' | -61.4 | NC_002794.1 | + | 189566 | 0.69 | 0.587406 |
Target: 5'- uCCCgCUCGGUCggccggccCGGGCcggCGC-CCCu -3' miRNA: 3'- uGGGaGAGCCAGa-------GCCCGa--GCGaGGG- -5' |
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10908 | 3' | -61.4 | NC_002794.1 | + | 14999 | 0.69 | 0.577851 |
Target: 5'- aGCuCCUCgggCGGUCUCGGcuggcuGCUCGUcgucaccuUCCUg -3' miRNA: 3'- -UG-GGAGa--GCCAGAGCC------CGAGCG--------AGGG- -5' |
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10908 | 3' | -61.4 | NC_002794.1 | + | 138817 | 0.69 | 0.577851 |
Target: 5'- gACCC-CgccgCGGUCUCGaGCUCGCgaCCg -3' miRNA: 3'- -UGGGaGa---GCCAGAGCcCGAGCGagGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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