miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10908 3' -61.4 NC_002794.1 + 68860 0.7 0.529767
Target:  5'- gACCC---CGGagCUCGGGCUCGCcggccucgcccguUCCCa -3'
miRNA:   3'- -UGGGagaGCCa-GAGCCCGAGCG-------------AGGG- -5'
10908 3' -61.4 NC_002794.1 + 99250 0.7 0.508553
Target:  5'- gACCCcgccgcggaggggCUCGGgggCUCcGGCgCGCUCCCg -3'
miRNA:   3'- -UGGGa------------GAGCCa--GAGcCCGaGCGAGGG- -5'
10908 3' -61.4 NC_002794.1 + 84185 0.71 0.485912
Target:  5'- gGCCCggcgCUCGGcCcgccucccaccacccCGGGCgCGCUCCCu -3'
miRNA:   3'- -UGGGa---GAGCCaGa--------------GCCCGaGCGAGGG- -5'
10908 3' -61.4 NC_002794.1 + 181089 0.71 0.485016
Target:  5'- cACgCUCUCGaugacgcUCUCGGGgaCGCUCUCg -3'
miRNA:   3'- -UGgGAGAGCc------AGAGCCCgaGCGAGGG- -5'
10908 3' -61.4 NC_002794.1 + 110995 0.71 0.475215
Target:  5'- gGCCgUCUCGGUCUucaggaaCGuGGUcaGCUCCCg -3'
miRNA:   3'- -UGGgAGAGCCAGA-------GC-CCGagCGAGGG- -5'
10908 3' -61.4 NC_002794.1 + 14901 0.71 0.458523
Target:  5'- gACCUUCgcgcUCGaUCgagCGGGCUCGCggUCCCg -3'
miRNA:   3'- -UGGGAG----AGCcAGa--GCCCGAGCG--AGGG- -5'
10908 3' -61.4 NC_002794.1 + 46483 0.71 0.441296
Target:  5'- gACgCUCUCGcccgaaCUCGGGCUCGCgcacgCCUg -3'
miRNA:   3'- -UGgGAGAGCca----GAGCCCGAGCGa----GGG- -5'
10908 3' -61.4 NC_002794.1 + 143113 0.71 0.441296
Target:  5'- aGCCCcgCUCGGccguggcgcaggUCUCGGGC-CaCUCCCc -3'
miRNA:   3'- -UGGGa-GAGCC------------AGAGCCCGaGcGAGGG- -5'
10908 3' -61.4 NC_002794.1 + 137157 0.72 0.424443
Target:  5'- gGCCgCcCUCGGUCcCGGccGCUCGCUCgCCc -3'
miRNA:   3'- -UGG-GaGAGCCAGaGCC--CGAGCGAG-GG- -5'
10908 3' -61.4 NC_002794.1 + 85028 0.72 0.40798
Target:  5'- gGCCCacgCUCGGgugcCUCGGGCccgCGCUCg- -3'
miRNA:   3'- -UGGGa--GAGCCa---GAGCCCGa--GCGAGgg -5'
10908 3' -61.4 NC_002794.1 + 4375 0.74 0.339061
Target:  5'- aGCUCUUUCGGUgUCGGuGaCUCGUUCUCu -3'
miRNA:   3'- -UGGGAGAGCCAgAGCC-C-GAGCGAGGG- -5'
10908 3' -61.4 NC_002794.1 + 25307 0.74 0.304587
Target:  5'- cACCCaUCUCGaGUCcgacCGGGCcuaucgCGCUCCCu -3'
miRNA:   3'- -UGGG-AGAGC-CAGa---GCCCGa-----GCGAGGG- -5'
10908 3' -61.4 NC_002794.1 + 6949 1.11 0.001026
Target:  5'- cACCCUCUCGGUCUCGGGCUCGCUCCCg -3'
miRNA:   3'- -UGGGAGAGCCAGAGCCCGAGCGAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.