miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10909 5' -59.5 NC_002794.1 + 151592 0.66 0.834215
Target:  5'- cGCGCCgccGCCGCGgGCcCgcgGuUCCUCGGc -3'
miRNA:   3'- -CGCGGa--UGGCGCaCGaGa--C-GGGAGUC- -5'
10909 5' -59.5 NC_002794.1 + 44898 0.66 0.82614
Target:  5'- uGCGUCUGCCGCcgauCUCcuUGgCCUCGGu -3'
miRNA:   3'- -CGCGGAUGGCGcac-GAG--ACgGGAGUC- -5'
10909 5' -59.5 NC_002794.1 + 125641 0.66 0.82614
Target:  5'- uGCGCCUAgCG-GcGUUCUG-CCUCGGc -3'
miRNA:   3'- -CGCGGAUgGCgCaCGAGACgGGAGUC- -5'
10909 5' -59.5 NC_002794.1 + 104890 0.66 0.817902
Target:  5'- cGgGCCgGCCGCGagGCgccgugCUGCUCgagCAGg -3'
miRNA:   3'- -CgCGGaUGGCGCa-CGa-----GACGGGa--GUC- -5'
10909 5' -59.5 NC_002794.1 + 100785 0.66 0.817902
Target:  5'- cGCGCCUGCgguuCGCGgccGCuUCUGCgCCUa-- -3'
miRNA:   3'- -CGCGGAUG----GCGCa--CG-AGACG-GGAguc -5'
10909 5' -59.5 NC_002794.1 + 113432 0.66 0.817902
Target:  5'- gGCGuUCUGCCGCGccGuCUCgGCgCUCAGc -3'
miRNA:   3'- -CGC-GGAUGGCGCa-C-GAGaCGgGAGUC- -5'
10909 5' -59.5 NC_002794.1 + 80788 0.66 0.809506
Target:  5'- uCGCCaccugcGCCGCGUGCUCcuccacGCCCg--- -3'
miRNA:   3'- cGCGGa-----UGGCGCACGAGa-----CGGGaguc -5'
10909 5' -59.5 NC_002794.1 + 116812 0.66 0.809506
Target:  5'- gGCGCCgUAgCGCGggucGCUCUgGUCC-CGGg -3'
miRNA:   3'- -CGCGG-AUgGCGCa---CGAGA-CGGGaGUC- -5'
10909 5' -59.5 NC_002794.1 + 192651 0.66 0.800961
Target:  5'- cGCGCC-GCCGCGcGCUCgcGCgaCUCGa -3'
miRNA:   3'- -CGCGGaUGGCGCaCGAGa-CGg-GAGUc -5'
10909 5' -59.5 NC_002794.1 + 130663 0.66 0.800961
Target:  5'- cCGCCgGCCGCGgGCUCcGCCg-CGGc -3'
miRNA:   3'- cGCGGaUGGCGCaCGAGaCGGgaGUC- -5'
10909 5' -59.5 NC_002794.1 + 78116 0.66 0.795766
Target:  5'- gGCGCCUccagacgccgcccgaGCCGCGagcGCUCgagacGCCgCUCGa -3'
miRNA:   3'- -CGCGGA---------------UGGCGCa--CGAGa----CGG-GAGUc -5'
10909 5' -59.5 NC_002794.1 + 50795 0.67 0.783453
Target:  5'- gGCGCCUccucGCCcgGCGUcgggcGCUCcggcgcccccGCCCUCGGg -3'
miRNA:   3'- -CGCGGA----UGG--CGCA-----CGAGa---------CGGGAGUC- -5'
10909 5' -59.5 NC_002794.1 + 69413 0.67 0.774506
Target:  5'- gGCGCCgaGCCGCGacagGCagagcgUCUGCCCg--- -3'
miRNA:   3'- -CGCGGa-UGGCGCa---CG------AGACGGGaguc -5'
10909 5' -59.5 NC_002794.1 + 32314 0.67 0.774506
Target:  5'- cGCGCCgGCCGCG-GC-CggagacaaGCCCUCc- -3'
miRNA:   3'- -CGCGGaUGGCGCaCGaGa-------CGGGAGuc -5'
10909 5' -59.5 NC_002794.1 + 108207 0.67 0.774506
Target:  5'- uGCGCC-GCCGCGccgGcCUCgcGCCCUgCGGc -3'
miRNA:   3'- -CGCGGaUGGCGCa--C-GAGa-CGGGA-GUC- -5'
10909 5' -59.5 NC_002794.1 + 105441 0.67 0.76544
Target:  5'- cGCGCCgGCgGCGccgucGUUCUGCCCg--- -3'
miRNA:   3'- -CGCGGaUGgCGCa----CGAGACGGGaguc -5'
10909 5' -59.5 NC_002794.1 + 152114 0.67 0.76544
Target:  5'- gGgGCUUGCUGCGccGCUCcGCCCUg-- -3'
miRNA:   3'- -CgCGGAUGGCGCa-CGAGaCGGGAguc -5'
10909 5' -59.5 NC_002794.1 + 181781 0.67 0.746987
Target:  5'- cGCGCC-GCCGCGUcucGUUCgGgCCUUGGa -3'
miRNA:   3'- -CGCGGaUGGCGCA---CGAGaCgGGAGUC- -5'
10909 5' -59.5 NC_002794.1 + 140500 0.67 0.743249
Target:  5'- gGCGCUgUACCGCGacuuccaccgcugGCggcagGCCCUCGGg -3'
miRNA:   3'- -CGCGG-AUGGCGCa------------CGaga--CGGGAGUC- -5'
10909 5' -59.5 NC_002794.1 + 185566 0.68 0.726258
Target:  5'- cGC-CCUGCCGCGgcagggcgcgcgGCUCU-CCCUCc- -3'
miRNA:   3'- -CGcGGAUGGCGCa-----------CGAGAcGGGAGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.