miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1091 3' -57.7 NC_000929.1 + 20593 0.66 0.446
Target:  5'- gGGCAGccGGaugaUGCCguGGCagaaCAGGCACUGGc -3'
miRNA:   3'- -CCGUCu-UCg---ACGG--UCG----GUCCGUGACU- -5'
1091 3' -57.7 NC_000929.1 + 31010 0.66 0.446
Target:  5'- cGCAGAuaauuuGCUGUCGGggcuuuuauuCCAGGCAagccCUGAc -3'
miRNA:   3'- cCGUCUu-----CGACGGUC----------GGUCCGU----GACU- -5'
1091 3' -57.7 NC_000929.1 + 11901 0.66 0.406708
Target:  5'- uGCAG-AGCUGuCCGGCgauaucCGGGUGCUGu -3'
miRNA:   3'- cCGUCuUCGAC-GGUCG------GUCCGUGACu -5'
1091 3' -57.7 NC_000929.1 + 19785 0.66 0.397229
Target:  5'- uGGCAGAuGGCUGUCgcGGUaaaAGGCGauCUGAc -3'
miRNA:   3'- -CCGUCU-UCGACGG--UCGg--UCCGU--GACU- -5'
1091 3' -57.7 NC_000929.1 + 17095 0.66 0.397229
Target:  5'- aGCAGAcgGGCUGgCAuauucCCGGuGCGCUGAu -3'
miRNA:   3'- cCGUCU--UCGACgGUc----GGUC-CGUGACU- -5'
1091 3' -57.7 NC_000929.1 + 16596 0.67 0.36966
Target:  5'- uGGCuGGAAcugccGCUGUCGcGuCCGGGCGCUGu -3'
miRNA:   3'- -CCG-UCUU-----CGACGGU-C-GGUCCGUGACu -5'
1091 3' -57.7 NC_000929.1 + 27766 0.67 0.36966
Target:  5'- gGGguGAAcgUGCCA-CCGGGCACgGAu -3'
miRNA:   3'- -CCguCUUcgACGGUcGGUCCGUGaCU- -5'
1091 3' -57.7 NC_000929.1 + 28180 0.71 0.2088
Target:  5'- -uCAGccGGGCUGCCAGCaCAGcCACUGAu -3'
miRNA:   3'- ccGUC--UUCGACGGUCG-GUCcGUGACU- -5'
1091 3' -57.7 NC_000929.1 + 31872 0.71 0.207092
Target:  5'- uGCGGuGGCUGCCAGCguuuCAcuggggcugucaguGGCACUGGu -3'
miRNA:   3'- cCGUCuUCGACGGUCG----GU--------------CCGUGACU- -5'
1091 3' -57.7 NC_000929.1 + 27275 0.71 0.197641
Target:  5'- aGCAGAuguGCUGCUGGCCccgcuGGCugUGc -3'
miRNA:   3'- cCGUCUu--CGACGGUCGGu----CCGugACu -5'
1091 3' -57.7 NC_000929.1 + 22593 0.72 0.18188
Target:  5'- ------cGUUGCCAGCCAGGCGCUu- -3'
miRNA:   3'- ccgucuuCGACGGUCGGUCCGUGAcu -5'
1091 3' -57.7 NC_000929.1 + 6238 0.73 0.153233
Target:  5'- cGCAGgcGUUGCCGGaauuacaguuaaaUCAGGCAUUGAg -3'
miRNA:   3'- cCGUCuuCGACGGUC-------------GGUCCGUGACU- -5'
1091 3' -57.7 NC_000929.1 + 24302 0.73 0.145181
Target:  5'- ---cGAAuGCUGUCAGCCgGGGCGCUGGg -3'
miRNA:   3'- ccguCUU-CGACGGUCGG-UCCGUGACU- -5'
1091 3' -57.7 NC_000929.1 + 27103 1.1 0.000214
Target:  5'- gGGCAGAAGCUGCCAGCCAGGCACUGAc -3'
miRNA:   3'- -CCGUCUUCGACGGUCGGUCCGUGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.