miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10910 5' -61 NC_002794.1 + 190460 0.66 0.797041
Target:  5'- cGCGG-C-GUCGCgCCCgAcGCCCACg -3'
miRNA:   3'- cCGCCaGuUAGCGgGGGgU-CGGGUGg -5'
10910 5' -61 NC_002794.1 + 21955 0.66 0.797041
Target:  5'- aGGCcGUCGGcCGCUCCCgCGGCgCCGUCg -3'
miRNA:   3'- -CCGcCAGUUaGCGGGGG-GUCG-GGUGG- -5'
10910 5' -61 NC_002794.1 + 187358 0.66 0.797041
Target:  5'- cGCGGUCAcguaggCGCgCagCAGCuCCGCCg -3'
miRNA:   3'- cCGCCAGUua----GCGgGggGUCG-GGUGG- -5'
10910 5' -61 NC_002794.1 + 187043 0.66 0.797041
Target:  5'- cGGCucgCAGUC-CCggagCCCgCGGCCCGCCa -3'
miRNA:   3'- -CCGccaGUUAGcGG----GGG-GUCGGGUGG- -5'
10910 5' -61 NC_002794.1 + 116682 0.66 0.797041
Target:  5'- aGCGuGUCGAUccgggagcCGgCCUCCAGCaCCGCg -3'
miRNA:   3'- cCGC-CAGUUA--------GCgGGGGGUCG-GGUGg -5'
10910 5' -61 NC_002794.1 + 188372 0.66 0.788478
Target:  5'- cGGCGGcCGAgggCGUUCuCCCGGgcuuCUCGCCg -3'
miRNA:   3'- -CCGCCaGUUa--GCGGG-GGGUC----GGGUGG- -5'
10910 5' -61 NC_002794.1 + 61725 0.66 0.788478
Target:  5'- --aGGUUGAcCGCCCgCCCcgcggaAGCCCGCg -3'
miRNA:   3'- ccgCCAGUUaGCGGG-GGG------UCGGGUGg -5'
10910 5' -61 NC_002794.1 + 84189 0.66 0.788478
Target:  5'- cGGCGcUCGGccCGCCUCCCA--CCACCc -3'
miRNA:   3'- -CCGCcAGUUa-GCGGGGGGUcgGGUGG- -5'
10910 5' -61 NC_002794.1 + 111640 0.66 0.788478
Target:  5'- cGcCGGUCGggCGCCgcggCCgCGGCCaCGCCc -3'
miRNA:   3'- cC-GCCAGUuaGCGG----GGgGUCGG-GUGG- -5'
10910 5' -61 NC_002794.1 + 8064 0.66 0.787615
Target:  5'- uGGCGGggcgcCAAgacggUGUUCCCCauggccaGGCCCAUCu -3'
miRNA:   3'- -CCGCCa----GUUa----GCGGGGGG-------UCGGGUGG- -5'
10910 5' -61 NC_002794.1 + 96121 0.66 0.787615
Target:  5'- gGGUGGUCGAcguugacCGCCUCCUgcAGUacgacgaCCACCu -3'
miRNA:   3'- -CCGCCAGUUa------GCGGGGGG--UCG-------GGUGG- -5'
10910 5' -61 NC_002794.1 + 53422 0.66 0.787615
Target:  5'- aGCGGcccgcucUCGcUCGCCCUCCcGCUCuCCa -3'
miRNA:   3'- cCGCC-------AGUuAGCGGGGGGuCGGGuGG- -5'
10910 5' -61 NC_002794.1 + 102979 0.66 0.787615
Target:  5'- cGGCGGcuccgguuuauugUC-GUCGCUcgacucgagCCgCUAGCCCGCCc -3'
miRNA:   3'- -CCGCC-------------AGuUAGCGG---------GG-GGUCGGGUGG- -5'
10910 5' -61 NC_002794.1 + 104763 0.66 0.77979
Target:  5'- aGCGGUCG---GCCCgCCGGCgCuCCg -3'
miRNA:   3'- cCGCCAGUuagCGGGgGGUCGgGuGG- -5'
10910 5' -61 NC_002794.1 + 71145 0.66 0.77979
Target:  5'- aGCGGgcug-UGCCgCCCCGGCaagcgCACCa -3'
miRNA:   3'- cCGCCaguuaGCGG-GGGGUCGg----GUGG- -5'
10910 5' -61 NC_002794.1 + 13144 0.66 0.77979
Target:  5'- cGCgGGUC-GUCGCCgUCCCAuGCCgCACa -3'
miRNA:   3'- cCG-CCAGuUAGCGG-GGGGU-CGG-GUGg -5'
10910 5' -61 NC_002794.1 + 188292 0.66 0.77979
Target:  5'- gGGCGc-CGcgCGCCggaCCCGGCCCGUCg -3'
miRNA:   3'- -CCGCcaGUuaGCGGg--GGGUCGGGUGG- -5'
10910 5' -61 NC_002794.1 + 153940 0.66 0.778914
Target:  5'- cGCGGaCAcUCGCUggcucuaCCCUGGCCCGgCg -3'
miRNA:   3'- cCGCCaGUuAGCGG-------GGGGUCGGGUgG- -5'
10910 5' -61 NC_002794.1 + 118649 0.66 0.770984
Target:  5'- cGGCGGcCAGcUCGUCCgugggcgcgacgCCCGcGgCCGCCg -3'
miRNA:   3'- -CCGCCaGUU-AGCGGG------------GGGU-CgGGUGG- -5'
10910 5' -61 NC_002794.1 + 186143 0.66 0.770984
Target:  5'- cGGCcGUCA--CGCCUUCC-GCCuCGCCg -3'
miRNA:   3'- -CCGcCAGUuaGCGGGGGGuCGG-GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.