miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10911 5' -52.4 NC_002794.1 + 110478 0.66 0.992091
Target:  5'- cUCgggGGGuaGAGAGGCGGuGGCGGcGCCuGGa -3'
miRNA:   3'- aAGa--CCC--UUUUUCGCC-UUGCU-CGG-CC- -5'
10911 5' -52.4 NC_002794.1 + 119895 0.66 0.992091
Target:  5'- -aCUGGcGGAucuuGGCGGc-CGAcGCCGGg -3'
miRNA:   3'- aaGACC-CUUuu--UCGCCuuGCU-CGGCC- -5'
10911 5' -52.4 NC_002794.1 + 179904 0.66 0.990213
Target:  5'- cUCcGGGAAuccGGAGCGGcuccgacgguuucgaAgacgacgucGCGGGCCGGg -3'
miRNA:   3'- aAGaCCCUU---UUUCGCC---------------U---------UGCUCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 153122 0.66 0.989693
Target:  5'- cUUC-GGGuucgguGGCGGcAGCGGGuCCGGa -3'
miRNA:   3'- -AAGaCCCuuuu--UCGCC-UUGCUC-GGCC- -5'
10911 5' -52.4 NC_002794.1 + 182339 0.66 0.989693
Target:  5'- ---cGGGc--GAGCGGAcggGCGGGCgGGu -3'
miRNA:   3'- aagaCCCuuuUUCGCCU---UGCUCGgCC- -5'
10911 5' -52.4 NC_002794.1 + 110596 0.66 0.989693
Target:  5'- ---aGGGGugcgugaacguGAAGCGGAGCggGAGCCGcGg -3'
miRNA:   3'- aagaCCCUu----------UUUCGCCUUG--CUCGGC-C- -5'
10911 5' -52.4 NC_002794.1 + 94225 0.66 0.988299
Target:  5'- ---cGGcGAcgGGCGG-GCGGGCCGGu -3'
miRNA:   3'- aagaCCcUUuuUCGCCuUGCUCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 98943 0.66 0.986762
Target:  5'- ---cGGGAAGGGGCuGGGGCucguGCUGGg -3'
miRNA:   3'- aagaCCCUUUUUCG-CCUUGcu--CGGCC- -5'
10911 5' -52.4 NC_002794.1 + 86483 0.66 0.986762
Target:  5'- ---cGGGAcgGAugcucCGGAcCGAGCCGGg -3'
miRNA:   3'- aagaCCCUuuUUc----GCCUuGCUCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 115131 0.66 0.986762
Target:  5'- gUCUGGGuc--GGuCGGGugGAgGUCGGu -3'
miRNA:   3'- aAGACCCuuuuUC-GCCUugCU-CGGCC- -5'
10911 5' -52.4 NC_002794.1 + 95479 0.66 0.985251
Target:  5'- cUCUGccguacguuGCGGAACGAGCuCGGc -3'
miRNA:   3'- aAGACccuuuuu--CGCCUUGCUCG-GCC- -5'
10911 5' -52.4 NC_002794.1 + 86928 0.66 0.985075
Target:  5'- --gUGGcGGGcAGGCGGGGCGGGauCCGGc -3'
miRNA:   3'- aagACC-CUUuUUCGCCUUGCUC--GGCC- -5'
10911 5' -52.4 NC_002794.1 + 176702 0.66 0.985075
Target:  5'- --aUGGGAAAcGGUGGA-CGGGaCCGa -3'
miRNA:   3'- aagACCCUUUuUCGCCUuGCUC-GGCc -5'
10911 5' -52.4 NC_002794.1 + 107038 0.67 0.983229
Target:  5'- -gCUGGGGAcccccgcgucgGAGGCGG--CGGGCgCGGc -3'
miRNA:   3'- aaGACCCUU-----------UUUCGCCuuGCUCG-GCC- -5'
10911 5' -52.4 NC_002794.1 + 38487 0.67 0.983229
Target:  5'- ---gGcGGAGGAAGCGcGGCGGcGCCGGu -3'
miRNA:   3'- aagaC-CCUUUUUCGCcUUGCU-CGGCC- -5'
10911 5' -52.4 NC_002794.1 + 92295 0.67 0.983229
Target:  5'- gUC-GGcGAcGAGGCGGGGCuGGGCgCGGg -3'
miRNA:   3'- aAGaCC-CUuUUUCGCCUUG-CUCG-GCC- -5'
10911 5' -52.4 NC_002794.1 + 145340 0.67 0.981215
Target:  5'- ---cGGGcccGAGCGGGccCGAGCUGGg -3'
miRNA:   3'- aagaCCCuuuUUCGCCUu-GCUCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 101022 0.67 0.981215
Target:  5'- gUCgGGGGAc--GCGGGcCGGGCgCGGg -3'
miRNA:   3'- aAGaCCCUUuuuCGCCUuGCUCG-GCC- -5'
10911 5' -52.4 NC_002794.1 + 129255 0.67 0.979026
Target:  5'- -aCUcGGGuc-GAGCGccucgucguGAGCGGGCCGGu -3'
miRNA:   3'- aaGA-CCCuuuUUCGC---------CUUGCUCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 3014 0.67 0.979026
Target:  5'- aUUCUGaGAAAAGG-GGAAcCGGGCgGGg -3'
miRNA:   3'- -AAGACcCUUUUUCgCCUU-GCUCGgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.