Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10911 | 5' | -52.4 | NC_002794.1 | + | 149538 | 0.68 | 0.965175 |
Target: 5'- -cCUGGGGc--GGaGGAugGAGCCGa -3' miRNA: 3'- aaGACCCUuuuUCgCCUugCUCGGCc -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 127663 | 0.68 | 0.971325 |
Target: 5'- ---gGGGGAAAAGcCGGGGaccuCGAGcCCGGu -3' miRNA: 3'- aagaCCCUUUUUC-GCCUU----GCUC-GGCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 123064 | 0.68 | 0.971325 |
Target: 5'- -gCUGGGGAcGAuGCaGAACGuGCCGa -3' miRNA: 3'- aaGACCCUUuUU-CGcCUUGCuCGGCc -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 119502 | 0.68 | 0.968356 |
Target: 5'- cUCgGGGucgucGGCGGcGCGgAGCCGGc -3' miRNA: 3'- aAGaCCCuuuu-UCGCCuUGC-UCGGCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 64006 | 0.68 | 0.958154 |
Target: 5'- gUCUGGGuccu-GCGGcuGGCGAuGUCGGa -3' miRNA: 3'- aAGACCCuuuuuCGCC--UUGCU-CGGCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 130254 | 0.67 | 0.974088 |
Target: 5'- gUUCUGcGGGAAcagcucgaaGAGCGGu-UGAGCCGc -3' miRNA: 3'- -AAGAC-CCUUU---------UUCGCCuuGCUCGGCc -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 92295 | 0.67 | 0.983229 |
Target: 5'- gUC-GGcGAcGAGGCGGGGCuGGGCgCGGg -3' miRNA: 3'- aAGaCC-CUuUUUCGCCUUG-CUCG-GCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 38487 | 0.67 | 0.983229 |
Target: 5'- ---gGcGGAGGAAGCGcGGCGGcGCCGGu -3' miRNA: 3'- aagaC-CCUUUUUCGCcUUGCU-CGGCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 145340 | 0.67 | 0.981215 |
Target: 5'- ---cGGGcccGAGCGGGccCGAGCUGGg -3' miRNA: 3'- aagaCCCuuuUUCGCCUu-GCUCGGCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 3014 | 0.67 | 0.979026 |
Target: 5'- aUUCUGaGAAAAGG-GGAAcCGGGCgGGg -3' miRNA: 3'- -AAGACcCUUUUUCgCCUU-GCUCGgCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 107038 | 0.67 | 0.983229 |
Target: 5'- -gCUGGGGAcccccgcgucgGAGGCGG--CGGGCgCGGc -3' miRNA: 3'- aaGACCCUU-----------UUUCGCCuuGCUCG-GCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 101022 | 0.67 | 0.981215 |
Target: 5'- gUCgGGGGAc--GCGGGcCGGGCgCGGg -3' miRNA: 3'- aAGaCCCUUuuuCGCCUuGCUCG-GCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 97970 | 0.67 | 0.979026 |
Target: 5'- gUCUuucGGGAAGAAuauGaCGGGaaauACGAGCUGGa -3' miRNA: 3'- aAGA---CCCUUUUU---C-GCCU----UGCUCGGCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 129255 | 0.67 | 0.979026 |
Target: 5'- -aCUcGGGuc-GAGCGccucgucguGAGCGGGCCGGu -3' miRNA: 3'- aaGA-CCCuuuUUCGC---------CUUGCUCGGCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 86684 | 0.67 | 0.976653 |
Target: 5'- ----uGGAAcGAGCGGGAcCGAGcCCGGu -3' miRNA: 3'- aagacCCUUuUUCGCCUU-GCUC-GGCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 110441 | 0.67 | 0.976653 |
Target: 5'- gUCgucGGu---GGCGGAggccgGCGAGCCGGc -3' miRNA: 3'- aAGac-CCuuuuUCGCCU-----UGCUCGGCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 118920 | 0.67 | 0.976653 |
Target: 5'- --gUGGGGuucagcAGGCGGuacACGAGcCCGGg -3' miRNA: 3'- aagACCCUuu----UUCGCCu--UGCUC-GGCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 43639 | 0.67 | 0.974088 |
Target: 5'- -gCUGGuGGAAcacgcugccGCcGAACGAGCCGGg -3' miRNA: 3'- aaGACC-CUUUuu-------CGcCUUGCUCGGCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 122582 | 0.67 | 0.976653 |
Target: 5'- -gCUGGGGAugauGaaGGACGGGCUGGc -3' miRNA: 3'- aaGACCCUUuuu-CgcCUUGCUCGGCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 95479 | 0.66 | 0.985251 |
Target: 5'- cUCUGccguacguuGCGGAACGAGCuCGGc -3' miRNA: 3'- aAGACccuuuuu--CGCCUUGCUCG-GCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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