miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10911 5' -52.4 NC_002794.1 + 3368 1.08 0.009348
Target:  5'- aUUCUGGGAAAAAGCGGAACGAGCCGGc -3'
miRNA:   3'- -AAGACCCUUUUUCGCCUUGCUCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 125730 0.81 0.382464
Target:  5'- ---cGGGAGGAGGCGGAgGCGGGCCGcGg -3'
miRNA:   3'- aagaCCCUUUUUCGCCU-UGCUCGGC-C- -5'
10911 5' -52.4 NC_002794.1 + 90994 0.8 0.443963
Target:  5'- ---cGGGccGAGGCGGAGCGGGCCGa -3'
miRNA:   3'- aagaCCCuuUUUCGCCUUGCUCGGCc -5'
10911 5' -52.4 NC_002794.1 + 115969 0.77 0.591396
Target:  5'- --gUGGGggGGAGCGGGACGGGgagCGGc -3'
miRNA:   3'- aagACCCuuUUUCGCCUUGCUCg--GCC- -5'
10911 5' -52.4 NC_002794.1 + 51235 0.75 0.701603
Target:  5'- --aUGGGAaacggucgcuucuaGAAGGCgugGGGGCGGGCCGGg -3'
miRNA:   3'- aagACCCU--------------UUUUCG---CCUUGCUCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 68479 0.74 0.744574
Target:  5'- --gUGGGGcacGGAGGCGGc-CGAGCCGGc -3'
miRNA:   3'- aagACCCU---UUUUCGCCuuGCUCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 95853 0.71 0.882419
Target:  5'- ---nGGGAGGcGGCGG-GCGGGCCGu -3'
miRNA:   3'- aagaCCCUUUuUCGCCuUGCUCGGCc -5'
10911 5' -52.4 NC_002794.1 + 95832 0.71 0.882419
Target:  5'- ---gGGGGAGcGGCGGcGGCG-GCCGGg -3'
miRNA:   3'- aagaCCCUUUuUCGCC-UUGCuCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 148068 0.71 0.882419
Target:  5'- cUCUGGGAGccgGGAGUGGccuCGAGCgaGGa -3'
miRNA:   3'- aAGACCCUU---UUUCGCCuu-GCUCGg-CC- -5'
10911 5' -52.4 NC_002794.1 + 150078 0.71 0.890069
Target:  5'- cUCUGGccuuccugcgcuGGGCGGAGCGugaGGCCGGa -3'
miRNA:   3'- aAGACCcuuu--------UUCGCCUUGC---UCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 61105 0.71 0.896119
Target:  5'- cUCUGGGAGAAAG-GGGACcAGCuCGu -3'
miRNA:   3'- aAGACCCUUUUUCgCCUUGcUCG-GCc -5'
10911 5' -52.4 NC_002794.1 + 145908 0.7 0.914898
Target:  5'- ---cGGGGGAgucgaccgcgccGAGCGGAG-GGGCCGGc -3'
miRNA:   3'- aagaCCCUUU------------UUCGCCUUgCUCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 87376 0.7 0.920675
Target:  5'- gUUCUGGGcggc-GCGGccagAGCGAGCCGc -3'
miRNA:   3'- -AAGACCCuuuuuCGCC----UUGCUCGGCc -5'
10911 5' -52.4 NC_002794.1 + 109939 0.7 0.931495
Target:  5'- gUUCUGGGGGucAG-GGA--GGGCCGGg -3'
miRNA:   3'- -AAGACCCUUuuUCgCCUugCUCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 183416 0.69 0.936046
Target:  5'- ---cGGGAccAGAAGCGGGagcgggaGCGGGaCCGGc -3'
miRNA:   3'- aagaCCCU--UUUUCGCCU-------UGCUC-GGCC- -5'
10911 5' -52.4 NC_002794.1 + 89817 0.69 0.94134
Target:  5'- gUgUGGGGugcguccuGgGGAACGAGUCGGu -3'
miRNA:   3'- aAgACCCUuuuu----CgCCUUGCUCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 10639 0.69 0.945899
Target:  5'- ---cGGGcGGGGAGCGGcGCGAGCCc- -3'
miRNA:   3'- aagaCCC-UUUUUCGCCuUGCUCGGcc -5'
10911 5' -52.4 NC_002794.1 + 115911 0.69 0.945899
Target:  5'- gUUCgUGGGguGGAcuuggcGCGGcGGCGGGCCGGc -3'
miRNA:   3'- -AAG-ACCCuuUUU------CGCC-UUGCUCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 116068 0.69 0.954303
Target:  5'- -aCUGGGGuc--GCGGAGCGcucGGCgCGGc -3'
miRNA:   3'- aaGACCCUuuuuCGCCUUGC---UCG-GCC- -5'
10911 5' -52.4 NC_002794.1 + 143647 0.68 0.958154
Target:  5'- ---cGGGGAAGAGCGuGGACGgcAGCCc- -3'
miRNA:   3'- aagaCCCUUUUUCGC-CUUGC--UCGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.