miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10911 5' -52.4 NC_002794.1 + 64006 0.68 0.958154
Target:  5'- gUCUGGGuccu-GCGGcuGGCGAuGUCGGa -3'
miRNA:   3'- aAGACCCuuuuuCGCC--UUGCU-CGGCC- -5'
10911 5' -52.4 NC_002794.1 + 149538 0.68 0.965175
Target:  5'- -cCUGGGGc--GGaGGAugGAGCCGa -3'
miRNA:   3'- aaGACCCUuuuUCgCCUugCUCGGCc -5'
10911 5' -52.4 NC_002794.1 + 119502 0.68 0.968356
Target:  5'- cUCgGGGucgucGGCGGcGCGgAGCCGGc -3'
miRNA:   3'- aAGaCCCuuuu-UCGCCuUGC-UCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 127663 0.68 0.971325
Target:  5'- ---gGGGGAAAAGcCGGGGaccuCGAGcCCGGu -3'
miRNA:   3'- aagaCCCUUUUUC-GCCUU----GCUC-GGCC- -5'
10911 5' -52.4 NC_002794.1 + 123064 0.68 0.971325
Target:  5'- -gCUGGGGAcGAuGCaGAACGuGCCGa -3'
miRNA:   3'- aaGACCCUUuUU-CGcCUUGCuCGGCc -5'
10911 5' -52.4 NC_002794.1 + 130254 0.67 0.974088
Target:  5'- gUUCUGcGGGAAcagcucgaaGAGCGGu-UGAGCCGc -3'
miRNA:   3'- -AAGAC-CCUUU---------UUCGCCuuGCUCGGCc -5'
10911 5' -52.4 NC_002794.1 + 43639 0.67 0.974088
Target:  5'- -gCUGGuGGAAcacgcugccGCcGAACGAGCCGGg -3'
miRNA:   3'- aaGACC-CUUUuu-------CGcCUUGCUCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 122582 0.67 0.976653
Target:  5'- -gCUGGGGAugauGaaGGACGGGCUGGc -3'
miRNA:   3'- aaGACCCUUuuu-CgcCUUGCUCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 86684 0.67 0.976653
Target:  5'- ----uGGAAcGAGCGGGAcCGAGcCCGGu -3'
miRNA:   3'- aagacCCUUuUUCGCCUU-GCUC-GGCC- -5'
10911 5' -52.4 NC_002794.1 + 118920 0.67 0.976653
Target:  5'- --gUGGGGuucagcAGGCGGuacACGAGcCCGGg -3'
miRNA:   3'- aagACCCUuu----UUCGCCu--UGCUC-GGCC- -5'
10911 5' -52.4 NC_002794.1 + 110441 0.67 0.976653
Target:  5'- gUCgucGGu---GGCGGAggccgGCGAGCCGGc -3'
miRNA:   3'- aAGac-CCuuuuUCGCCU-----UGCUCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 97970 0.67 0.979026
Target:  5'- gUCUuucGGGAAGAAuauGaCGGGaaauACGAGCUGGa -3'
miRNA:   3'- aAGA---CCCUUUUU---C-GCCU----UGCUCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 3014 0.67 0.979026
Target:  5'- aUUCUGaGAAAAGG-GGAAcCGGGCgGGg -3'
miRNA:   3'- -AAGACcCUUUUUCgCCUU-GCUCGgCC- -5'
10911 5' -52.4 NC_002794.1 + 129255 0.67 0.979026
Target:  5'- -aCUcGGGuc-GAGCGccucgucguGAGCGGGCCGGu -3'
miRNA:   3'- aaGA-CCCuuuUUCGC---------CUUGCUCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 101022 0.67 0.981215
Target:  5'- gUCgGGGGAc--GCGGGcCGGGCgCGGg -3'
miRNA:   3'- aAGaCCCUUuuuCGCCUuGCUCG-GCC- -5'
10911 5' -52.4 NC_002794.1 + 145340 0.67 0.981215
Target:  5'- ---cGGGcccGAGCGGGccCGAGCUGGg -3'
miRNA:   3'- aagaCCCuuuUUCGCCUu-GCUCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 107038 0.67 0.983229
Target:  5'- -gCUGGGGAcccccgcgucgGAGGCGG--CGGGCgCGGc -3'
miRNA:   3'- aaGACCCUU-----------UUUCGCCuuGCUCG-GCC- -5'
10911 5' -52.4 NC_002794.1 + 38487 0.67 0.983229
Target:  5'- ---gGcGGAGGAAGCGcGGCGGcGCCGGu -3'
miRNA:   3'- aagaC-CCUUUUUCGCcUUGCU-CGGCC- -5'
10911 5' -52.4 NC_002794.1 + 92295 0.67 0.983229
Target:  5'- gUC-GGcGAcGAGGCGGGGCuGGGCgCGGg -3'
miRNA:   3'- aAGaCC-CUuUUUCGCCUUG-CUCG-GCC- -5'
10911 5' -52.4 NC_002794.1 + 176702 0.66 0.985075
Target:  5'- --aUGGGAAAcGGUGGA-CGGGaCCGa -3'
miRNA:   3'- aagACCCUUUuUCGCCUuGCUC-GGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.