miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10911 5' -52.4 NC_002794.1 + 97970 0.67 0.979026
Target:  5'- gUCUuucGGGAAGAAuauGaCGGGaaauACGAGCUGGa -3'
miRNA:   3'- aAGA---CCCUUUUU---C-GCCU----UGCUCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 122582 0.67 0.976653
Target:  5'- -gCUGGGGAugauGaaGGACGGGCUGGc -3'
miRNA:   3'- aaGACCCUUuuu-CgcCUUGCUCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 118920 0.67 0.976653
Target:  5'- --gUGGGGuucagcAGGCGGuacACGAGcCCGGg -3'
miRNA:   3'- aagACCCUuu----UUCGCCu--UGCUC-GGCC- -5'
10911 5' -52.4 NC_002794.1 + 110441 0.67 0.976653
Target:  5'- gUCgucGGu---GGCGGAggccgGCGAGCCGGc -3'
miRNA:   3'- aAGac-CCuuuuUCGCCU-----UGCUCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 86684 0.67 0.976653
Target:  5'- ----uGGAAcGAGCGGGAcCGAGcCCGGu -3'
miRNA:   3'- aagacCCUUuUUCGCCUU-GCUC-GGCC- -5'
10911 5' -52.4 NC_002794.1 + 130254 0.67 0.974088
Target:  5'- gUUCUGcGGGAAcagcucgaaGAGCGGu-UGAGCCGc -3'
miRNA:   3'- -AAGAC-CCUUU---------UUCGCCuuGCUCGGCc -5'
10911 5' -52.4 NC_002794.1 + 43639 0.67 0.974088
Target:  5'- -gCUGGuGGAAcacgcugccGCcGAACGAGCCGGg -3'
miRNA:   3'- aaGACC-CUUUuu-------CGcCUUGCUCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 123064 0.68 0.971325
Target:  5'- -gCUGGGGAcGAuGCaGAACGuGCCGa -3'
miRNA:   3'- aaGACCCUUuUU-CGcCUUGCuCGGCc -5'
10911 5' -52.4 NC_002794.1 + 127663 0.68 0.971325
Target:  5'- ---gGGGGAAAAGcCGGGGaccuCGAGcCCGGu -3'
miRNA:   3'- aagaCCCUUUUUC-GCCUU----GCUC-GGCC- -5'
10911 5' -52.4 NC_002794.1 + 119502 0.68 0.968356
Target:  5'- cUCgGGGucgucGGCGGcGCGgAGCCGGc -3'
miRNA:   3'- aAGaCCCuuuu-UCGCCuUGC-UCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 149538 0.68 0.965175
Target:  5'- -cCUGGGGc--GGaGGAugGAGCCGa -3'
miRNA:   3'- aaGACCCUuuuUCgCCUugCUCGGCc -5'
10911 5' -52.4 NC_002794.1 + 143647 0.68 0.958154
Target:  5'- ---cGGGGAAGAGCGuGGACGgcAGCCc- -3'
miRNA:   3'- aagaCCCUUUUUCGC-CUUGC--UCGGcc -5'
10911 5' -52.4 NC_002794.1 + 64006 0.68 0.958154
Target:  5'- gUCUGGGuccu-GCGGcuGGCGAuGUCGGa -3'
miRNA:   3'- aAGACCCuuuuuCGCC--UUGCU-CGGCC- -5'
10911 5' -52.4 NC_002794.1 + 116068 0.69 0.954303
Target:  5'- -aCUGGGGuc--GCGGAGCGcucGGCgCGGc -3'
miRNA:   3'- aaGACCCUuuuuCGCCUUGC---UCG-GCC- -5'
10911 5' -52.4 NC_002794.1 + 10639 0.69 0.945899
Target:  5'- ---cGGGcGGGGAGCGGcGCGAGCCc- -3'
miRNA:   3'- aagaCCC-UUUUUCGCCuUGCUCGGcc -5'
10911 5' -52.4 NC_002794.1 + 115911 0.69 0.945899
Target:  5'- gUUCgUGGGguGGAcuuggcGCGGcGGCGGGCCGGc -3'
miRNA:   3'- -AAG-ACCCuuUUU------CGCC-UUGCUCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 89817 0.69 0.94134
Target:  5'- gUgUGGGGugcguccuGgGGAACGAGUCGGu -3'
miRNA:   3'- aAgACCCUuuuu----CgCCUUGCUCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 183416 0.69 0.936046
Target:  5'- ---cGGGAccAGAAGCGGGagcgggaGCGGGaCCGGc -3'
miRNA:   3'- aagaCCCU--UUUUCGCCU-------UGCUC-GGCC- -5'
10911 5' -52.4 NC_002794.1 + 109939 0.7 0.931495
Target:  5'- gUUCUGGGGGucAG-GGA--GGGCCGGg -3'
miRNA:   3'- -AAGACCCUUuuUCgCCUugCUCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 87376 0.7 0.920675
Target:  5'- gUUCUGGGcggc-GCGGccagAGCGAGCCGc -3'
miRNA:   3'- -AAGACCCuuuuuCGCC----UUGCUCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.