miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10911 5' -52.4 NC_002794.1 + 3014 0.67 0.979026
Target:  5'- aUUCUGaGAAAAGG-GGAAcCGGGCgGGg -3'
miRNA:   3'- -AAGACcCUUUUUCgCCUU-GCUCGgCC- -5'
10911 5' -52.4 NC_002794.1 + 3368 1.08 0.009348
Target:  5'- aUUCUGGGAAAAAGCGGAACGAGCCGGc -3'
miRNA:   3'- -AAGACCCUUUUUCGCCUUGCUCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 10639 0.69 0.945899
Target:  5'- ---cGGGcGGGGAGCGGcGCGAGCCc- -3'
miRNA:   3'- aagaCCC-UUUUUCGCCuUGCUCGGcc -5'
10911 5' -52.4 NC_002794.1 + 38487 0.67 0.983229
Target:  5'- ---gGcGGAGGAAGCGcGGCGGcGCCGGu -3'
miRNA:   3'- aagaC-CCUUUUUCGCcUUGCU-CGGCC- -5'
10911 5' -52.4 NC_002794.1 + 43639 0.67 0.974088
Target:  5'- -gCUGGuGGAAcacgcugccGCcGAACGAGCCGGg -3'
miRNA:   3'- aaGACC-CUUUuu-------CGcCUUGCUCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 51235 0.75 0.701603
Target:  5'- --aUGGGAaacggucgcuucuaGAAGGCgugGGGGCGGGCCGGg -3'
miRNA:   3'- aagACCCU--------------UUUUCG---CCUUGCUCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 61105 0.71 0.896119
Target:  5'- cUCUGGGAGAAAG-GGGACcAGCuCGu -3'
miRNA:   3'- aAGACCCUUUUUCgCCUUGcUCG-GCc -5'
10911 5' -52.4 NC_002794.1 + 64006 0.68 0.958154
Target:  5'- gUCUGGGuccu-GCGGcuGGCGAuGUCGGa -3'
miRNA:   3'- aAGACCCuuuuuCGCC--UUGCU-CGGCC- -5'
10911 5' -52.4 NC_002794.1 + 68479 0.74 0.744574
Target:  5'- --gUGGGGcacGGAGGCGGc-CGAGCCGGc -3'
miRNA:   3'- aagACCCU---UUUUCGCCuuGCUCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 86483 0.66 0.986762
Target:  5'- ---cGGGAcgGAugcucCGGAcCGAGCCGGg -3'
miRNA:   3'- aagaCCCUuuUUc----GCCUuGCUCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 86684 0.67 0.976653
Target:  5'- ----uGGAAcGAGCGGGAcCGAGcCCGGu -3'
miRNA:   3'- aagacCCUUuUUCGCCUU-GCUC-GGCC- -5'
10911 5' -52.4 NC_002794.1 + 86928 0.66 0.985075
Target:  5'- --gUGGcGGGcAGGCGGGGCGGGauCCGGc -3'
miRNA:   3'- aagACC-CUUuUUCGCCUUGCUC--GGCC- -5'
10911 5' -52.4 NC_002794.1 + 87376 0.7 0.920675
Target:  5'- gUUCUGGGcggc-GCGGccagAGCGAGCCGc -3'
miRNA:   3'- -AAGACCCuuuuuCGCC----UUGCUCGGCc -5'
10911 5' -52.4 NC_002794.1 + 89817 0.69 0.94134
Target:  5'- gUgUGGGGugcguccuGgGGAACGAGUCGGu -3'
miRNA:   3'- aAgACCCUuuuu----CgCCUUGCUCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 90994 0.8 0.443963
Target:  5'- ---cGGGccGAGGCGGAGCGGGCCGa -3'
miRNA:   3'- aagaCCCuuUUUCGCCUUGCUCGGCc -5'
10911 5' -52.4 NC_002794.1 + 92295 0.67 0.983229
Target:  5'- gUC-GGcGAcGAGGCGGGGCuGGGCgCGGg -3'
miRNA:   3'- aAGaCC-CUuUUUCGCCUUG-CUCG-GCC- -5'
10911 5' -52.4 NC_002794.1 + 94225 0.66 0.988299
Target:  5'- ---cGGcGAcgGGCGG-GCGGGCCGGu -3'
miRNA:   3'- aagaCCcUUuuUCGCCuUGCUCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 95479 0.66 0.985251
Target:  5'- cUCUGccguacguuGCGGAACGAGCuCGGc -3'
miRNA:   3'- aAGACccuuuuu--CGCCUUGCUCG-GCC- -5'
10911 5' -52.4 NC_002794.1 + 95832 0.71 0.882419
Target:  5'- ---gGGGGAGcGGCGGcGGCG-GCCGGg -3'
miRNA:   3'- aagaCCCUUUuUCGCC-UUGCuCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 95853 0.71 0.882419
Target:  5'- ---nGGGAGGcGGCGG-GCGGGCCGu -3'
miRNA:   3'- aagaCCCUUUuUCGCCuUGCUCGGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.