Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10911 | 5' | -52.4 | NC_002794.1 | + | 97970 | 0.67 | 0.979026 |
Target: 5'- gUCUuucGGGAAGAAuauGaCGGGaaauACGAGCUGGa -3' miRNA: 3'- aAGA---CCCUUUUU---C-GCCU----UGCUCGGCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 98943 | 0.66 | 0.986762 |
Target: 5'- ---cGGGAAGGGGCuGGGGCucguGCUGGg -3' miRNA: 3'- aagaCCCUUUUUCG-CCUUGcu--CGGCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 101022 | 0.67 | 0.981215 |
Target: 5'- gUCgGGGGAc--GCGGGcCGGGCgCGGg -3' miRNA: 3'- aAGaCCCUUuuuCGCCUuGCUCG-GCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 107038 | 0.67 | 0.983229 |
Target: 5'- -gCUGGGGAcccccgcgucgGAGGCGG--CGGGCgCGGc -3' miRNA: 3'- aaGACCCUU-----------UUUCGCCuuGCUCG-GCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 109939 | 0.7 | 0.931495 |
Target: 5'- gUUCUGGGGGucAG-GGA--GGGCCGGg -3' miRNA: 3'- -AAGACCCUUuuUCgCCUugCUCGGCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 110441 | 0.67 | 0.976653 |
Target: 5'- gUCgucGGu---GGCGGAggccgGCGAGCCGGc -3' miRNA: 3'- aAGac-CCuuuuUCGCCU-----UGCUCGGCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 110478 | 0.66 | 0.992091 |
Target: 5'- cUCgggGGGuaGAGAGGCGGuGGCGGcGCCuGGa -3' miRNA: 3'- aAGa--CCC--UUUUUCGCC-UUGCU-CGG-CC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 110596 | 0.66 | 0.989693 |
Target: 5'- ---aGGGGugcgugaacguGAAGCGGAGCggGAGCCGcGg -3' miRNA: 3'- aagaCCCUu----------UUUCGCCUUG--CUCGGC-C- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 115131 | 0.66 | 0.986762 |
Target: 5'- gUCUGGGuc--GGuCGGGugGAgGUCGGu -3' miRNA: 3'- aAGACCCuuuuUC-GCCUugCU-CGGCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 115911 | 0.69 | 0.945899 |
Target: 5'- gUUCgUGGGguGGAcuuggcGCGGcGGCGGGCCGGc -3' miRNA: 3'- -AAG-ACCCuuUUU------CGCC-UUGCUCGGCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 115969 | 0.77 | 0.591396 |
Target: 5'- --gUGGGggGGAGCGGGACGGGgagCGGc -3' miRNA: 3'- aagACCCuuUUUCGCCUUGCUCg--GCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 116068 | 0.69 | 0.954303 |
Target: 5'- -aCUGGGGuc--GCGGAGCGcucGGCgCGGc -3' miRNA: 3'- aaGACCCUuuuuCGCCUUGC---UCG-GCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 118920 | 0.67 | 0.976653 |
Target: 5'- --gUGGGGuucagcAGGCGGuacACGAGcCCGGg -3' miRNA: 3'- aagACCCUuu----UUCGCCu--UGCUC-GGCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 119502 | 0.68 | 0.968356 |
Target: 5'- cUCgGGGucgucGGCGGcGCGgAGCCGGc -3' miRNA: 3'- aAGaCCCuuuu-UCGCCuUGC-UCGGCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 119895 | 0.66 | 0.992091 |
Target: 5'- -aCUGGcGGAucuuGGCGGc-CGAcGCCGGg -3' miRNA: 3'- aaGACC-CUUuu--UCGCCuuGCU-CGGCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 122582 | 0.67 | 0.976653 |
Target: 5'- -gCUGGGGAugauGaaGGACGGGCUGGc -3' miRNA: 3'- aaGACCCUUuuu-CgcCUUGCUCGGCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 123064 | 0.68 | 0.971325 |
Target: 5'- -gCUGGGGAcGAuGCaGAACGuGCCGa -3' miRNA: 3'- aaGACCCUUuUU-CGcCUUGCuCGGCc -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 125730 | 0.81 | 0.382464 |
Target: 5'- ---cGGGAGGAGGCGGAgGCGGGCCGcGg -3' miRNA: 3'- aagaCCCUUUUUCGCCU-UGCUCGGC-C- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 127663 | 0.68 | 0.971325 |
Target: 5'- ---gGGGGAAAAGcCGGGGaccuCGAGcCCGGu -3' miRNA: 3'- aagaCCCUUUUUC-GCCUU----GCUC-GGCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 129255 | 0.67 | 0.979026 |
Target: 5'- -aCUcGGGuc-GAGCGccucgucguGAGCGGGCCGGu -3' miRNA: 3'- aaGA-CCCuuuUUCGC---------CUUGCUCGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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