Results 41 - 52 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10911 | 5' | -52.4 | NC_002794.1 | + | 130254 | 0.67 | 0.974088 |
Target: 5'- gUUCUGcGGGAAcagcucgaaGAGCGGu-UGAGCCGc -3' miRNA: 3'- -AAGAC-CCUUU---------UUCGCCuuGCUCGGCc -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 143647 | 0.68 | 0.958154 |
Target: 5'- ---cGGGGAAGAGCGuGGACGgcAGCCc- -3' miRNA: 3'- aagaCCCUUUUUCGC-CUUGC--UCGGcc -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 145340 | 0.67 | 0.981215 |
Target: 5'- ---cGGGcccGAGCGGGccCGAGCUGGg -3' miRNA: 3'- aagaCCCuuuUUCGCCUu-GCUCGGCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 145908 | 0.7 | 0.914898 |
Target: 5'- ---cGGGGGAgucgaccgcgccGAGCGGAG-GGGCCGGc -3' miRNA: 3'- aagaCCCUUU------------UUCGCCUUgCUCGGCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 148068 | 0.71 | 0.882419 |
Target: 5'- cUCUGGGAGccgGGAGUGGccuCGAGCgaGGa -3' miRNA: 3'- aAGACCCUU---UUUCGCCuu-GCUCGg-CC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 149538 | 0.68 | 0.965175 |
Target: 5'- -cCUGGGGc--GGaGGAugGAGCCGa -3' miRNA: 3'- aaGACCCUuuuUCgCCUugCUCGGCc -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 150078 | 0.71 | 0.890069 |
Target: 5'- cUCUGGccuuccugcgcuGGGCGGAGCGugaGGCCGGa -3' miRNA: 3'- aAGACCcuuu--------UUCGCCUUGC---UCGGCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 153122 | 0.66 | 0.989693 |
Target: 5'- cUUC-GGGuucgguGGCGGcAGCGGGuCCGGa -3' miRNA: 3'- -AAGaCCCuuuu--UCGCC-UUGCUC-GGCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 176702 | 0.66 | 0.985075 |
Target: 5'- --aUGGGAAAcGGUGGA-CGGGaCCGa -3' miRNA: 3'- aagACCCUUUuUCGCCUuGCUC-GGCc -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 179904 | 0.66 | 0.990213 |
Target: 5'- cUCcGGGAAuccGGAGCGGcuccgacgguuucgaAgacgacgucGCGGGCCGGg -3' miRNA: 3'- aAGaCCCUU---UUUCGCC---------------U---------UGCUCGGCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 182339 | 0.66 | 0.989693 |
Target: 5'- ---cGGGc--GAGCGGAcggGCGGGCgGGu -3' miRNA: 3'- aagaCCCuuuUUCGCCU---UGCUCGgCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 183416 | 0.69 | 0.936046 |
Target: 5'- ---cGGGAccAGAAGCGGGagcgggaGCGGGaCCGGc -3' miRNA: 3'- aagaCCCU--UUUUCGCCU-------UGCUC-GGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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