miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10911 5' -52.4 NC_002794.1 + 183416 0.69 0.936046
Target:  5'- ---cGGGAccAGAAGCGGGagcgggaGCGGGaCCGGc -3'
miRNA:   3'- aagaCCCU--UUUUCGCCU-------UGCUC-GGCC- -5'
10911 5' -52.4 NC_002794.1 + 182339 0.66 0.989693
Target:  5'- ---cGGGc--GAGCGGAcggGCGGGCgGGu -3'
miRNA:   3'- aagaCCCuuuUUCGCCU---UGCUCGgCC- -5'
10911 5' -52.4 NC_002794.1 + 179904 0.66 0.990213
Target:  5'- cUCcGGGAAuccGGAGCGGcuccgacgguuucgaAgacgacgucGCGGGCCGGg -3'
miRNA:   3'- aAGaCCCUU---UUUCGCC---------------U---------UGCUCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 176702 0.66 0.985075
Target:  5'- --aUGGGAAAcGGUGGA-CGGGaCCGa -3'
miRNA:   3'- aagACCCUUUuUCGCCUuGCUC-GGCc -5'
10911 5' -52.4 NC_002794.1 + 153122 0.66 0.989693
Target:  5'- cUUC-GGGuucgguGGCGGcAGCGGGuCCGGa -3'
miRNA:   3'- -AAGaCCCuuuu--UCGCC-UUGCUC-GGCC- -5'
10911 5' -52.4 NC_002794.1 + 150078 0.71 0.890069
Target:  5'- cUCUGGccuuccugcgcuGGGCGGAGCGugaGGCCGGa -3'
miRNA:   3'- aAGACCcuuu--------UUCGCCUUGC---UCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 149538 0.68 0.965175
Target:  5'- -cCUGGGGc--GGaGGAugGAGCCGa -3'
miRNA:   3'- aaGACCCUuuuUCgCCUugCUCGGCc -5'
10911 5' -52.4 NC_002794.1 + 148068 0.71 0.882419
Target:  5'- cUCUGGGAGccgGGAGUGGccuCGAGCgaGGa -3'
miRNA:   3'- aAGACCCUU---UUUCGCCuu-GCUCGg-CC- -5'
10911 5' -52.4 NC_002794.1 + 145908 0.7 0.914898
Target:  5'- ---cGGGGGAgucgaccgcgccGAGCGGAG-GGGCCGGc -3'
miRNA:   3'- aagaCCCUUU------------UUCGCCUUgCUCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 145340 0.67 0.981215
Target:  5'- ---cGGGcccGAGCGGGccCGAGCUGGg -3'
miRNA:   3'- aagaCCCuuuUUCGCCUu-GCUCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 143647 0.68 0.958154
Target:  5'- ---cGGGGAAGAGCGuGGACGgcAGCCc- -3'
miRNA:   3'- aagaCCCUUUUUCGC-CUUGC--UCGGcc -5'
10911 5' -52.4 NC_002794.1 + 130254 0.67 0.974088
Target:  5'- gUUCUGcGGGAAcagcucgaaGAGCGGu-UGAGCCGc -3'
miRNA:   3'- -AAGAC-CCUUU---------UUCGCCuuGCUCGGCc -5'
10911 5' -52.4 NC_002794.1 + 129255 0.67 0.979026
Target:  5'- -aCUcGGGuc-GAGCGccucgucguGAGCGGGCCGGu -3'
miRNA:   3'- aaGA-CCCuuuUUCGC---------CUUGCUCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 127663 0.68 0.971325
Target:  5'- ---gGGGGAAAAGcCGGGGaccuCGAGcCCGGu -3'
miRNA:   3'- aagaCCCUUUUUC-GCCUU----GCUC-GGCC- -5'
10911 5' -52.4 NC_002794.1 + 125730 0.81 0.382464
Target:  5'- ---cGGGAGGAGGCGGAgGCGGGCCGcGg -3'
miRNA:   3'- aagaCCCUUUUUCGCCU-UGCUCGGC-C- -5'
10911 5' -52.4 NC_002794.1 + 123064 0.68 0.971325
Target:  5'- -gCUGGGGAcGAuGCaGAACGuGCCGa -3'
miRNA:   3'- aaGACCCUUuUU-CGcCUUGCuCGGCc -5'
10911 5' -52.4 NC_002794.1 + 122582 0.67 0.976653
Target:  5'- -gCUGGGGAugauGaaGGACGGGCUGGc -3'
miRNA:   3'- aaGACCCUUuuu-CgcCUUGCUCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 119895 0.66 0.992091
Target:  5'- -aCUGGcGGAucuuGGCGGc-CGAcGCCGGg -3'
miRNA:   3'- aaGACC-CUUuu--UCGCCuuGCU-CGGCC- -5'
10911 5' -52.4 NC_002794.1 + 119502 0.68 0.968356
Target:  5'- cUCgGGGucgucGGCGGcGCGgAGCCGGc -3'
miRNA:   3'- aAGaCCCuuuu-UCGCCuUGC-UCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 118920 0.67 0.976653
Target:  5'- --gUGGGGuucagcAGGCGGuacACGAGcCCGGg -3'
miRNA:   3'- aagACCCUuu----UUCGCCu--UGCUC-GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.