miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10911 5' -52.4 NC_002794.1 + 116068 0.69 0.954303
Target:  5'- -aCUGGGGuc--GCGGAGCGcucGGCgCGGc -3'
miRNA:   3'- aaGACCCUuuuuCGCCUUGC---UCG-GCC- -5'
10911 5' -52.4 NC_002794.1 + 115969 0.77 0.591396
Target:  5'- --gUGGGggGGAGCGGGACGGGgagCGGc -3'
miRNA:   3'- aagACCCuuUUUCGCCUUGCUCg--GCC- -5'
10911 5' -52.4 NC_002794.1 + 115911 0.69 0.945899
Target:  5'- gUUCgUGGGguGGAcuuggcGCGGcGGCGGGCCGGc -3'
miRNA:   3'- -AAG-ACCCuuUUU------CGCC-UUGCUCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 115131 0.66 0.986762
Target:  5'- gUCUGGGuc--GGuCGGGugGAgGUCGGu -3'
miRNA:   3'- aAGACCCuuuuUC-GCCUugCU-CGGCC- -5'
10911 5' -52.4 NC_002794.1 + 110596 0.66 0.989693
Target:  5'- ---aGGGGugcgugaacguGAAGCGGAGCggGAGCCGcGg -3'
miRNA:   3'- aagaCCCUu----------UUUCGCCUUG--CUCGGC-C- -5'
10911 5' -52.4 NC_002794.1 + 110478 0.66 0.992091
Target:  5'- cUCgggGGGuaGAGAGGCGGuGGCGGcGCCuGGa -3'
miRNA:   3'- aAGa--CCC--UUUUUCGCC-UUGCU-CGG-CC- -5'
10911 5' -52.4 NC_002794.1 + 110441 0.67 0.976653
Target:  5'- gUCgucGGu---GGCGGAggccgGCGAGCCGGc -3'
miRNA:   3'- aAGac-CCuuuuUCGCCU-----UGCUCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 109939 0.7 0.931495
Target:  5'- gUUCUGGGGGucAG-GGA--GGGCCGGg -3'
miRNA:   3'- -AAGACCCUUuuUCgCCUugCUCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 107038 0.67 0.983229
Target:  5'- -gCUGGGGAcccccgcgucgGAGGCGG--CGGGCgCGGc -3'
miRNA:   3'- aaGACCCUU-----------UUUCGCCuuGCUCG-GCC- -5'
10911 5' -52.4 NC_002794.1 + 101022 0.67 0.981215
Target:  5'- gUCgGGGGAc--GCGGGcCGGGCgCGGg -3'
miRNA:   3'- aAGaCCCUUuuuCGCCUuGCUCG-GCC- -5'
10911 5' -52.4 NC_002794.1 + 98943 0.66 0.986762
Target:  5'- ---cGGGAAGGGGCuGGGGCucguGCUGGg -3'
miRNA:   3'- aagaCCCUUUUUCG-CCUUGcu--CGGCC- -5'
10911 5' -52.4 NC_002794.1 + 97970 0.67 0.979026
Target:  5'- gUCUuucGGGAAGAAuauGaCGGGaaauACGAGCUGGa -3'
miRNA:   3'- aAGA---CCCUUUUU---C-GCCU----UGCUCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 95853 0.71 0.882419
Target:  5'- ---nGGGAGGcGGCGG-GCGGGCCGu -3'
miRNA:   3'- aagaCCCUUUuUCGCCuUGCUCGGCc -5'
10911 5' -52.4 NC_002794.1 + 95832 0.71 0.882419
Target:  5'- ---gGGGGAGcGGCGGcGGCG-GCCGGg -3'
miRNA:   3'- aagaCCCUUUuUCGCC-UUGCuCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 95479 0.66 0.985251
Target:  5'- cUCUGccguacguuGCGGAACGAGCuCGGc -3'
miRNA:   3'- aAGACccuuuuu--CGCCUUGCUCG-GCC- -5'
10911 5' -52.4 NC_002794.1 + 94225 0.66 0.988299
Target:  5'- ---cGGcGAcgGGCGG-GCGGGCCGGu -3'
miRNA:   3'- aagaCCcUUuuUCGCCuUGCUCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 92295 0.67 0.983229
Target:  5'- gUC-GGcGAcGAGGCGGGGCuGGGCgCGGg -3'
miRNA:   3'- aAGaCC-CUuUUUCGCCUUG-CUCG-GCC- -5'
10911 5' -52.4 NC_002794.1 + 90994 0.8 0.443963
Target:  5'- ---cGGGccGAGGCGGAGCGGGCCGa -3'
miRNA:   3'- aagaCCCuuUUUCGCCUUGCUCGGCc -5'
10911 5' -52.4 NC_002794.1 + 89817 0.69 0.94134
Target:  5'- gUgUGGGGugcguccuGgGGAACGAGUCGGu -3'
miRNA:   3'- aAgACCCUuuuu----CgCCUUGCUCGGCC- -5'
10911 5' -52.4 NC_002794.1 + 87376 0.7 0.920675
Target:  5'- gUUCUGGGcggc-GCGGccagAGCGAGCCGc -3'
miRNA:   3'- -AAGACCCuuuuuCGCC----UUGCUCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.