Results 41 - 52 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10911 | 5' | -52.4 | NC_002794.1 | + | 130254 | 0.67 | 0.974088 |
Target: 5'- gUUCUGcGGGAAcagcucgaaGAGCGGu-UGAGCCGc -3' miRNA: 3'- -AAGAC-CCUUU---------UUCGCCuuGCUCGGCc -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 118920 | 0.67 | 0.976653 |
Target: 5'- --gUGGGGuucagcAGGCGGuacACGAGcCCGGg -3' miRNA: 3'- aagACCCUuu----UUCGCCu--UGCUC-GGCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 110441 | 0.67 | 0.976653 |
Target: 5'- gUCgucGGu---GGCGGAggccgGCGAGCCGGc -3' miRNA: 3'- aAGac-CCuuuuUCGCCU-----UGCUCGGCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 86684 | 0.67 | 0.976653 |
Target: 5'- ----uGGAAcGAGCGGGAcCGAGcCCGGu -3' miRNA: 3'- aagacCCUUuUUCGCCUU-GCUC-GGCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 3014 | 0.67 | 0.979026 |
Target: 5'- aUUCUGaGAAAAGG-GGAAcCGGGCgGGg -3' miRNA: 3'- -AAGACcCUUUUUCgCCUU-GCUCGgCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 129255 | 0.67 | 0.979026 |
Target: 5'- -aCUcGGGuc-GAGCGccucgucguGAGCGGGCCGGu -3' miRNA: 3'- aaGA-CCCuuuUUCGC---------CUUGCUCGGCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 97970 | 0.67 | 0.979026 |
Target: 5'- gUCUuucGGGAAGAAuauGaCGGGaaauACGAGCUGGa -3' miRNA: 3'- aAGA---CCCUUUUU---C-GCCU----UGCUCGGCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 101022 | 0.67 | 0.981215 |
Target: 5'- gUCgGGGGAc--GCGGGcCGGGCgCGGg -3' miRNA: 3'- aAGaCCCUUuuuCGCCUuGCUCG-GCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 107038 | 0.67 | 0.983229 |
Target: 5'- -gCUGGGGAcccccgcgucgGAGGCGG--CGGGCgCGGc -3' miRNA: 3'- aaGACCCUU-----------UUUCGCCuuGCUCG-GCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 145340 | 0.67 | 0.981215 |
Target: 5'- ---cGGGcccGAGCGGGccCGAGCUGGg -3' miRNA: 3'- aagaCCCuuuUUCGCCUu-GCUCGGCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 38487 | 0.67 | 0.983229 |
Target: 5'- ---gGcGGAGGAAGCGcGGCGGcGCCGGu -3' miRNA: 3'- aagaC-CCUUUUUCGCcUUGCU-CGGCC- -5' |
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10911 | 5' | -52.4 | NC_002794.1 | + | 110478 | 0.66 | 0.992091 |
Target: 5'- cUCgggGGGuaGAGAGGCGGuGGCGGcGCCuGGa -3' miRNA: 3'- aAGa--CCC--UUUUUCGCC-UUGCU-CGG-CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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