miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10912 3' -54.5 NC_002794.1 + 142317 0.66 0.973083
Target:  5'- -gGAGGcGGCggCGCagGCggcgGAGGCGGCg -3'
miRNA:   3'- agUUCCaCUGa-GCGg-CGa---CUCUGUCG- -5'
10912 3' -54.5 NC_002794.1 + 138121 0.66 0.973083
Target:  5'- gCGuGGUG-CUCGUCGCcgGucucGGGCGGCg -3'
miRNA:   3'- aGUuCCACuGAGCGGCGa-C----UCUGUCG- -5'
10912 3' -54.5 NC_002794.1 + 179655 0.66 0.973083
Target:  5'- gUCAGGcG-GGCUCGCCG----GACGGCa -3'
miRNA:   3'- -AGUUC-CaCUGAGCGGCgacuCUGUCG- -5'
10912 3' -54.5 NC_002794.1 + 108142 0.66 0.973083
Target:  5'- ---cGGcugGAUUCGCCGCcGGGAgcgcCGGCg -3'
miRNA:   3'- aguuCCa--CUGAGCGGCGaCUCU----GUCG- -5'
10912 3' -54.5 NC_002794.1 + 85260 0.66 0.972812
Target:  5'- gCAAGGUGGgaagagcacacCUCucggcuccggucaGCgGCUGAGACgaGGCg -3'
miRNA:   3'- aGUUCCACU-----------GAG-------------CGgCGACUCUG--UCG- -5'
10912 3' -54.5 NC_002794.1 + 66955 0.66 0.970292
Target:  5'- cUCGAGGccggcGAgUCGCuCGCcGGGGgAGCg -3'
miRNA:   3'- -AGUUCCa----CUgAGCG-GCGaCUCUgUCG- -5'
10912 3' -54.5 NC_002794.1 + 177446 0.66 0.970292
Target:  5'- gCGGGGaucgGACUCGUCGCgGucACGGUc -3'
miRNA:   3'- aGUUCCa---CUGAGCGGCGaCucUGUCG- -5'
10912 3' -54.5 NC_002794.1 + 121376 0.66 0.970292
Target:  5'- cCGAGccGGC-CGCCGCcGGGACcGCg -3'
miRNA:   3'- aGUUCcaCUGaGCGGCGaCUCUGuCG- -5'
10912 3' -54.5 NC_002794.1 + 114012 0.66 0.970292
Target:  5'- -gGAGGagcGACUCGUacagGC-GGGGCAGCg -3'
miRNA:   3'- agUUCCa--CUGAGCGg---CGaCUCUGUCG- -5'
10912 3' -54.5 NC_002794.1 + 120053 0.66 0.9673
Target:  5'- gCGGcGGUGGCg-GCCGCgGAGGCcgacgcGGCg -3'
miRNA:   3'- aGUU-CCACUGagCGGCGaCUCUG------UCG- -5'
10912 3' -54.5 NC_002794.1 + 144888 0.66 0.964101
Target:  5'- gCGGGGcgaGACgcucgCGCCGCUGGGccccgccgcCGGCa -3'
miRNA:   3'- aGUUCCa--CUGa----GCGGCGACUCu--------GUCG- -5'
10912 3' -54.5 NC_002794.1 + 40487 0.66 0.964101
Target:  5'- aUCGAacGGccgGcGCUCGCCGCUcGAGucACGGCc -3'
miRNA:   3'- -AGUU--CCa--C-UGAGCGGCGA-CUC--UGUCG- -5'
10912 3' -54.5 NC_002794.1 + 189371 0.66 0.96069
Target:  5'- cCAGGcUGagccGCUCGCCGCUGuGcuCGGCc -3'
miRNA:   3'- aGUUCcAC----UGAGCGGCGACuCu-GUCG- -5'
10912 3' -54.5 NC_002794.1 + 55972 0.66 0.96069
Target:  5'- gUCGAGGUGgaugGCguaGCCGCgggcGAGcacCAGCa -3'
miRNA:   3'- -AGUUCCAC----UGag-CGGCGa---CUCu--GUCG- -5'
10912 3' -54.5 NC_002794.1 + 151548 0.66 0.960337
Target:  5'- cCAAGGagaucGAgUUGCUGCUGAcguagcgccccccGGCGGCg -3'
miRNA:   3'- aGUUCCa----CUgAGCGGCGACU-------------CUGUCG- -5'
10912 3' -54.5 NC_002794.1 + 46747 0.66 0.957061
Target:  5'- ------cGACUucCGCCGCUGGaucGACGGCg -3'
miRNA:   3'- aguuccaCUGA--GCGGCGACU---CUGUCG- -5'
10912 3' -54.5 NC_002794.1 + 116883 0.67 0.953209
Target:  5'- gUCAGGGgGGCgccggCGCCGuCUccGGCGGCc -3'
miRNA:   3'- -AGUUCCaCUGa----GCGGC-GAcuCUGUCG- -5'
10912 3' -54.5 NC_002794.1 + 52041 0.67 0.953209
Target:  5'- cUCAAGGaccuGCUCGagaGCUccGAGACGGCc -3'
miRNA:   3'- -AGUUCCac--UGAGCgg-CGA--CUCUGUCG- -5'
10912 3' -54.5 NC_002794.1 + 115984 0.67 0.949132
Target:  5'- aCGGGGa-GCggCGCCGCgGAGACcGCg -3'
miRNA:   3'- aGUUCCacUGa-GCGGCGaCUCUGuCG- -5'
10912 3' -54.5 NC_002794.1 + 141397 0.67 0.947864
Target:  5'- uUCGGGG-GGCUCGgCGacgacgaugaccucgGGGGCGGCg -3'
miRNA:   3'- -AGUUCCaCUGAGCgGCga-------------CUCUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.