Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10912 | 3' | -54.5 | NC_002794.1 | + | 141397 | 0.67 | 0.947864 |
Target: 5'- uUCGGGG-GGCUCGgCGacgacgaugaccucgGGGGCGGCg -3' miRNA: 3'- -AGUUCCaCUGAGCgGCga-------------CUCUGUCG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 115984 | 0.67 | 0.949132 |
Target: 5'- aCGGGGa-GCggCGCCGCgGAGACcGCg -3' miRNA: 3'- aGUUCCacUGa-GCGGCGaCUCUGuCG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 52041 | 0.67 | 0.953209 |
Target: 5'- cUCAAGGaccuGCUCGagaGCUccGAGACGGCc -3' miRNA: 3'- -AGUUCCac--UGAGCgg-CGA--CUCUGUCG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 116883 | 0.67 | 0.953209 |
Target: 5'- gUCAGGGgGGCgccggCGCCGuCUccGGCGGCc -3' miRNA: 3'- -AGUUCCaCUGa----GCGGC-GAcuCUGUCG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 32023 | 0.68 | 0.901923 |
Target: 5'- gCAGGG-GACgcggCGCUGCcGAuACAGCg -3' miRNA: 3'- aGUUCCaCUGa---GCGGCGaCUcUGUCG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 44259 | 0.68 | 0.91406 |
Target: 5'- --cGGGcGGCUCgGCCGCcgGGGACGGa -3' miRNA: 3'- aguUCCaCUGAG-CGGCGa-CUCUGUCg -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 123438 | 0.68 | 0.919778 |
Target: 5'- ---cGGUGAC-CGUCGCcGAG-CGGCu -3' miRNA: 3'- aguuCCACUGaGCGGCGaCUCuGUCG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 92602 | 0.68 | 0.91406 |
Target: 5'- aCGcGGUGGCcuucUCGCCGCUGcuGGC-GCa -3' miRNA: 3'- aGUuCCACUG----AGCGGCGACu-CUGuCG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 125735 | 0.68 | 0.925259 |
Target: 5'- -gGAGGcggaGGCggGCCGC-GGGACGGCg -3' miRNA: 3'- agUUCCa---CUGagCGGCGaCUCUGUCG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 113934 | 0.68 | 0.925259 |
Target: 5'- cCGAGGcGACggGCCGCUGccGGGCuuccuGCa -3' miRNA: 3'- aGUUCCaCUGagCGGCGAC--UCUGu----CG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 191630 | 0.68 | 0.925794 |
Target: 5'- aCGGGGUuuccGcCUCGCCGUccagcagcccgccggGGGACGGCg -3' miRNA: 3'- aGUUCCA----CuGAGCGGCGa--------------CUCUGUCG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 70681 | 0.68 | 0.930504 |
Target: 5'- gCGGcGGUGACguccugUCGCCGCUGGGggucccacccACuGCg -3' miRNA: 3'- aGUU-CCACUG------AGCGGCGACUC----------UGuCG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 92242 | 0.69 | 0.867614 |
Target: 5'- cCAAGGagcccucGGCggCGUCGCUGGcGGCGGCg -3' miRNA: 3'- aGUUCCa------CUGa-GCGGCGACU-CUGUCG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 96912 | 0.69 | 0.882 |
Target: 5'- -gGAGGUGGCggaggCGCCGgc--GACAGCa -3' miRNA: 3'- agUUCCACUGa----GCGGCgacuCUGUCG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 114585 | 0.69 | 0.867614 |
Target: 5'- -gAGGGUG-CUCGUCGCUcuGGACgAGCu -3' miRNA: 3'- agUUCCACuGAGCGGCGAc-UCUG-UCG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 107101 | 0.69 | 0.895508 |
Target: 5'- -gGGGGUGugUCGCUGC-GAGcCGcGCu -3' miRNA: 3'- agUUCCACugAGCGGCGaCUCuGU-CG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 138405 | 0.7 | 0.825574 |
Target: 5'- gUCGAGGUcgucgccggccgccGACUCgucgaGCCGCgGuGGCGGCg -3' miRNA: 3'- -AGUUCCA--------------CUGAG-----CGGCGaCuCUGUCG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 142848 | 0.71 | 0.811003 |
Target: 5'- uUCAGGGc--CUCcCCGCUGAgcGACAGCu -3' miRNA: 3'- -AGUUCCacuGAGcGGCGACU--CUGUCG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 35051 | 0.71 | 0.801326 |
Target: 5'- -gGAGGUccaccauGAC-CGCCGCUGcGugGGCg -3' miRNA: 3'- agUUCCA-------CUGaGCGGCGACuCugUCG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 137784 | 0.71 | 0.784185 |
Target: 5'- gUCGAGGUG-CagGUCGCUGAGG-AGCc -3' miRNA: 3'- -AGUUCCACuGagCGGCGACUCUgUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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