miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10912 3' -54.5 NC_002794.1 + 3160 1.13 0.002868
Target:  5'- cUCAAGGUGACUCGCCGCUGAGACAGCg -3'
miRNA:   3'- -AGUUCCACUGAGCGGCGACUCUGUCG- -5'
10912 3' -54.5 NC_002794.1 + 74069 0.8 0.333929
Target:  5'- cUCAAGGUGGCggcccuccUCGCCGagucGGGACAGCu -3'
miRNA:   3'- -AGUUCCACUG--------AGCGGCga--CUCUGUCG- -5'
10912 3' -54.5 NC_002794.1 + 105425 0.77 0.487588
Target:  5'- cCAGGGUGGCcgcCGCCGCgccGGCGGCg -3'
miRNA:   3'- aGUUCCACUGa--GCGGCGacuCUGUCG- -5'
10912 3' -54.5 NC_002794.1 + 129063 0.73 0.707385
Target:  5'- gCGAcGGUGugUCGCgGCUGGcGGCGGa -3'
miRNA:   3'- aGUU-CCACugAGCGgCGACU-CUGUCg -5'
10912 3' -54.5 NC_002794.1 + 116115 0.73 0.7173
Target:  5'- gUCGAGGUcGAgUcCGCCGCgGcGGCGGCg -3'
miRNA:   3'- -AGUUCCA-CUgA-GCGGCGaCuCUGUCG- -5'
10912 3' -54.5 NC_002794.1 + 179703 0.73 0.7173
Target:  5'- gCGAcGGUGGCgaCGCCGgcggcuacCUGAGAUAGCg -3'
miRNA:   3'- aGUU-CCACUGa-GCGGC--------GACUCUGUCG- -5'
10912 3' -54.5 NC_002794.1 + 137784 0.71 0.784185
Target:  5'- gUCGAGGUG-CagGUCGCUGAGG-AGCc -3'
miRNA:   3'- -AGUUCCACuGagCGGCGACUCUgUCG- -5'
10912 3' -54.5 NC_002794.1 + 35051 0.71 0.801326
Target:  5'- -gGAGGUccaccauGAC-CGCCGCUGcGugGGCg -3'
miRNA:   3'- agUUCCA-------CUGaGCGGCGACuCugUCG- -5'
10912 3' -54.5 NC_002794.1 + 142848 0.71 0.811003
Target:  5'- uUCAGGGc--CUCcCCGCUGAgcGACAGCu -3'
miRNA:   3'- -AGUUCCacuGAGcGGCGACU--CUGUCG- -5'
10912 3' -54.5 NC_002794.1 + 138405 0.7 0.825574
Target:  5'- gUCGAGGUcgucgccggccgccGACUCgucgaGCCGCgGuGGCGGCg -3'
miRNA:   3'- -AGUUCCA--------------CUGAG-----CGGCGaCuCUGUCG- -5'
10912 3' -54.5 NC_002794.1 + 92242 0.69 0.867614
Target:  5'- cCAAGGagcccucGGCggCGUCGCUGGcGGCGGCg -3'
miRNA:   3'- aGUUCCa------CUGa-GCGGCGACU-CUGUCG- -5'
10912 3' -54.5 NC_002794.1 + 114585 0.69 0.867614
Target:  5'- -gAGGGUG-CUCGUCGCUcuGGACgAGCu -3'
miRNA:   3'- agUUCCACuGAGCGGCGAc-UCUG-UCG- -5'
10912 3' -54.5 NC_002794.1 + 96912 0.69 0.882
Target:  5'- -gGAGGUGGCggaggCGCCGgc--GACAGCa -3'
miRNA:   3'- agUUCCACUGa----GCGGCgacuCUGUCG- -5'
10912 3' -54.5 NC_002794.1 + 107101 0.69 0.895508
Target:  5'- -gGGGGUGugUCGCUGC-GAGcCGcGCu -3'
miRNA:   3'- agUUCCACugAGCGGCGaCUCuGU-CG- -5'
10912 3' -54.5 NC_002794.1 + 32023 0.68 0.901923
Target:  5'- gCAGGG-GACgcggCGCUGCcGAuACAGCg -3'
miRNA:   3'- aGUUCCaCUGa---GCGGCGaCUcUGUCG- -5'
10912 3' -54.5 NC_002794.1 + 92602 0.68 0.91406
Target:  5'- aCGcGGUGGCcuucUCGCCGCUGcuGGC-GCa -3'
miRNA:   3'- aGUuCCACUG----AGCGGCGACu-CUGuCG- -5'
10912 3' -54.5 NC_002794.1 + 44259 0.68 0.91406
Target:  5'- --cGGGcGGCUCgGCCGCcgGGGACGGa -3'
miRNA:   3'- aguUCCaCUGAG-CGGCGa-CUCUGUCg -5'
10912 3' -54.5 NC_002794.1 + 123438 0.68 0.919778
Target:  5'- ---cGGUGAC-CGUCGCcGAG-CGGCu -3'
miRNA:   3'- aguuCCACUGaGCGGCGaCUCuGUCG- -5'
10912 3' -54.5 NC_002794.1 + 125735 0.68 0.925259
Target:  5'- -gGAGGcggaGGCggGCCGC-GGGACGGCg -3'
miRNA:   3'- agUUCCa---CUGagCGGCGaCUCUGUCG- -5'
10912 3' -54.5 NC_002794.1 + 113934 0.68 0.925259
Target:  5'- cCGAGGcGACggGCCGCUGccGGGCuuccuGCa -3'
miRNA:   3'- aGUUCCaCUGagCGGCGAC--UCUGu----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.