Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10912 | 3' | -54.5 | NC_002794.1 | + | 142317 | 0.66 | 0.973083 |
Target: 5'- -gGAGGcGGCggCGCagGCggcgGAGGCGGCg -3' miRNA: 3'- agUUCCaCUGa-GCGg-CGa---CUCUGUCG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 138121 | 0.66 | 0.973083 |
Target: 5'- gCGuGGUG-CUCGUCGCcgGucucGGGCGGCg -3' miRNA: 3'- aGUuCCACuGAGCGGCGa-C----UCUGUCG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 179655 | 0.66 | 0.973083 |
Target: 5'- gUCAGGcG-GGCUCGCCG----GACGGCa -3' miRNA: 3'- -AGUUC-CaCUGAGCGGCgacuCUGUCG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 108142 | 0.66 | 0.973083 |
Target: 5'- ---cGGcugGAUUCGCCGCcGGGAgcgcCGGCg -3' miRNA: 3'- aguuCCa--CUGAGCGGCGaCUCU----GUCG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 85260 | 0.66 | 0.972812 |
Target: 5'- gCAAGGUGGgaagagcacacCUCucggcuccggucaGCgGCUGAGACgaGGCg -3' miRNA: 3'- aGUUCCACU-----------GAG-------------CGgCGACUCUG--UCG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 66955 | 0.66 | 0.970292 |
Target: 5'- cUCGAGGccggcGAgUCGCuCGCcGGGGgAGCg -3' miRNA: 3'- -AGUUCCa----CUgAGCG-GCGaCUCUgUCG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 177446 | 0.66 | 0.970292 |
Target: 5'- gCGGGGaucgGACUCGUCGCgGucACGGUc -3' miRNA: 3'- aGUUCCa---CUGAGCGGCGaCucUGUCG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 121376 | 0.66 | 0.970292 |
Target: 5'- cCGAGccGGC-CGCCGCcGGGACcGCg -3' miRNA: 3'- aGUUCcaCUGaGCGGCGaCUCUGuCG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 114012 | 0.66 | 0.970292 |
Target: 5'- -gGAGGagcGACUCGUacagGC-GGGGCAGCg -3' miRNA: 3'- agUUCCa--CUGAGCGg---CGaCUCUGUCG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 120053 | 0.66 | 0.9673 |
Target: 5'- gCGGcGGUGGCg-GCCGCgGAGGCcgacgcGGCg -3' miRNA: 3'- aGUU-CCACUGagCGGCGaCUCUG------UCG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 144888 | 0.66 | 0.964101 |
Target: 5'- gCGGGGcgaGACgcucgCGCCGCUGGGccccgccgcCGGCa -3' miRNA: 3'- aGUUCCa--CUGa----GCGGCGACUCu--------GUCG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 40487 | 0.66 | 0.964101 |
Target: 5'- aUCGAacGGccgGcGCUCGCCGCUcGAGucACGGCc -3' miRNA: 3'- -AGUU--CCa--C-UGAGCGGCGA-CUC--UGUCG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 189371 | 0.66 | 0.96069 |
Target: 5'- cCAGGcUGagccGCUCGCCGCUGuGcuCGGCc -3' miRNA: 3'- aGUUCcAC----UGAGCGGCGACuCu-GUCG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 55972 | 0.66 | 0.96069 |
Target: 5'- gUCGAGGUGgaugGCguaGCCGCgggcGAGcacCAGCa -3' miRNA: 3'- -AGUUCCAC----UGag-CGGCGa---CUCu--GUCG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 151548 | 0.66 | 0.960337 |
Target: 5'- cCAAGGagaucGAgUUGCUGCUGAcguagcgccccccGGCGGCg -3' miRNA: 3'- aGUUCCa----CUgAGCGGCGACU-------------CUGUCG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 46747 | 0.66 | 0.957061 |
Target: 5'- ------cGACUucCGCCGCUGGaucGACGGCg -3' miRNA: 3'- aguuccaCUGA--GCGGCGACU---CUGUCG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 116883 | 0.67 | 0.953209 |
Target: 5'- gUCAGGGgGGCgccggCGCCGuCUccGGCGGCc -3' miRNA: 3'- -AGUUCCaCUGa----GCGGC-GAcuCUGUCG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 52041 | 0.67 | 0.953209 |
Target: 5'- cUCAAGGaccuGCUCGagaGCUccGAGACGGCc -3' miRNA: 3'- -AGUUCCac--UGAGCgg-CGA--CUCUGUCG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 115984 | 0.67 | 0.949132 |
Target: 5'- aCGGGGa-GCggCGCCGCgGAGACcGCg -3' miRNA: 3'- aGUUCCacUGa-GCGGCGaCUCUGuCG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 141397 | 0.67 | 0.947864 |
Target: 5'- uUCGGGG-GGCUCGgCGacgacgaugaccucgGGGGCGGCg -3' miRNA: 3'- -AGUUCCaCUGAGCgGCga-------------CUCUGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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