Results 41 - 46 of 46 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 10912 | 3' | -54.5 | NC_002794.1 | + | 179703 | 0.73 | 0.7173 |
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Target: 5'- gCGAcGGUGGCgaCGCCGgcggcuacCUGAGAUAGCg -3' miRNA: 3'- aGUU-CCACUGa-GCGGC--------GACUCUGUCG- -5' |
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| 10912 | 3' | -54.5 | NC_002794.1 | + | 116115 | 0.73 | 0.7173 |
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Target: 5'- gUCGAGGUcGAgUcCGCCGCgGcGGCGGCg -3' miRNA: 3'- -AGUUCCA-CUgA-GCGGCGaCuCUGUCG- -5' |
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| 10912 | 3' | -54.5 | NC_002794.1 | + | 129063 | 0.73 | 0.707385 |
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Target: 5'- gCGAcGGUGugUCGCgGCUGGcGGCGGa -3' miRNA: 3'- aGUU-CCACugAGCGgCGACU-CUGUCg -5' |
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| 10912 | 3' | -54.5 | NC_002794.1 | + | 105425 | 0.77 | 0.487588 |
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Target: 5'- cCAGGGUGGCcgcCGCCGCgccGGCGGCg -3' miRNA: 3'- aGUUCCACUGa--GCGGCGacuCUGUCG- -5' |
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| 10912 | 3' | -54.5 | NC_002794.1 | + | 74069 | 0.8 | 0.333929 |
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Target: 5'- cUCAAGGUGGCggcccuccUCGCCGagucGGGACAGCu -3' miRNA: 3'- -AGUUCCACUG--------AGCGGCga--CUCUGUCG- -5' |
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| 10912 | 3' | -54.5 | NC_002794.1 | + | 3160 | 1.13 | 0.002868 |
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Target: 5'- cUCAAGGUGACUCGCCGCUGAGACAGCg -3' miRNA: 3'- -AGUUCCACUGAGCGGCGACUCUGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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