Results 41 - 46 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10912 | 3' | -54.5 | NC_002794.1 | + | 151548 | 0.66 | 0.960337 |
Target: 5'- cCAAGGagaucGAgUUGCUGCUGAcguagcgccccccGGCGGCg -3' miRNA: 3'- aGUUCCa----CUgAGCGGCGACU-------------CUGUCG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 177446 | 0.66 | 0.970292 |
Target: 5'- gCGGGGaucgGACUCGUCGCgGucACGGUc -3' miRNA: 3'- aGUUCCa---CUGAGCGGCGaCucUGUCG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 179655 | 0.66 | 0.973083 |
Target: 5'- gUCAGGcG-GGCUCGCCG----GACGGCa -3' miRNA: 3'- -AGUUC-CaCUGAGCGGCgacuCUGUCG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 179703 | 0.73 | 0.7173 |
Target: 5'- gCGAcGGUGGCgaCGCCGgcggcuacCUGAGAUAGCg -3' miRNA: 3'- aGUU-CCACUGa-GCGGC--------GACUCUGUCG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 189371 | 0.66 | 0.96069 |
Target: 5'- cCAGGcUGagccGCUCGCCGCUGuGcuCGGCc -3' miRNA: 3'- aGUUCcAC----UGAGCGGCGACuCu-GUCG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 191630 | 0.68 | 0.925794 |
Target: 5'- aCGGGGUuuccGcCUCGCCGUccagcagcccgccggGGGACGGCg -3' miRNA: 3'- aGUUCCA----CuGAGCGGCGa--------------CUCUGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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