Results 1 - 20 of 46 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10912 | 3' | -54.5 | NC_002794.1 | + | 191630 | 0.68 | 0.925794 |
Target: 5'- aCGGGGUuuccGcCUCGCCGUccagcagcccgccggGGGACGGCg -3' miRNA: 3'- aGUUCCA----CuGAGCGGCGa--------------CUCUGUCG- -5' |
|||||||
10912 | 3' | -54.5 | NC_002794.1 | + | 189371 | 0.66 | 0.96069 |
Target: 5'- cCAGGcUGagccGCUCGCCGCUGuGcuCGGCc -3' miRNA: 3'- aGUUCcAC----UGAGCGGCGACuCu-GUCG- -5' |
|||||||
10912 | 3' | -54.5 | NC_002794.1 | + | 179703 | 0.73 | 0.7173 |
Target: 5'- gCGAcGGUGGCgaCGCCGgcggcuacCUGAGAUAGCg -3' miRNA: 3'- aGUU-CCACUGa-GCGGC--------GACUCUGUCG- -5' |
|||||||
10912 | 3' | -54.5 | NC_002794.1 | + | 179655 | 0.66 | 0.973083 |
Target: 5'- gUCAGGcG-GGCUCGCCG----GACGGCa -3' miRNA: 3'- -AGUUC-CaCUGAGCGGCgacuCUGUCG- -5' |
|||||||
10912 | 3' | -54.5 | NC_002794.1 | + | 177446 | 0.66 | 0.970292 |
Target: 5'- gCGGGGaucgGACUCGUCGCgGucACGGUc -3' miRNA: 3'- aGUUCCa---CUGAGCGGCGaCucUGUCG- -5' |
|||||||
10912 | 3' | -54.5 | NC_002794.1 | + | 151548 | 0.66 | 0.960337 |
Target: 5'- cCAAGGagaucGAgUUGCUGCUGAcguagcgccccccGGCGGCg -3' miRNA: 3'- aGUUCCa----CUgAGCGGCGACU-------------CUGUCG- -5' |
|||||||
10912 | 3' | -54.5 | NC_002794.1 | + | 144888 | 0.66 | 0.964101 |
Target: 5'- gCGGGGcgaGACgcucgCGCCGCUGGGccccgccgcCGGCa -3' miRNA: 3'- aGUUCCa--CUGa----GCGGCGACUCu--------GUCG- -5' |
|||||||
10912 | 3' | -54.5 | NC_002794.1 | + | 142848 | 0.71 | 0.811003 |
Target: 5'- uUCAGGGc--CUCcCCGCUGAgcGACAGCu -3' miRNA: 3'- -AGUUCCacuGAGcGGCGACU--CUGUCG- -5' |
|||||||
10912 | 3' | -54.5 | NC_002794.1 | + | 142317 | 0.66 | 0.973083 |
Target: 5'- -gGAGGcGGCggCGCagGCggcgGAGGCGGCg -3' miRNA: 3'- agUUCCaCUGa-GCGg-CGa---CUCUGUCG- -5' |
|||||||
10912 | 3' | -54.5 | NC_002794.1 | + | 141397 | 0.67 | 0.947864 |
Target: 5'- uUCGGGG-GGCUCGgCGacgacgaugaccucgGGGGCGGCg -3' miRNA: 3'- -AGUUCCaCUGAGCgGCga-------------CUCUGUCG- -5' |
|||||||
10912 | 3' | -54.5 | NC_002794.1 | + | 138405 | 0.7 | 0.825574 |
Target: 5'- gUCGAGGUcgucgccggccgccGACUCgucgaGCCGCgGuGGCGGCg -3' miRNA: 3'- -AGUUCCA--------------CUGAG-----CGGCGaCuCUGUCG- -5' |
|||||||
10912 | 3' | -54.5 | NC_002794.1 | + | 138121 | 0.66 | 0.973083 |
Target: 5'- gCGuGGUG-CUCGUCGCcgGucucGGGCGGCg -3' miRNA: 3'- aGUuCCACuGAGCGGCGa-C----UCUGUCG- -5' |
|||||||
10912 | 3' | -54.5 | NC_002794.1 | + | 137784 | 0.71 | 0.784185 |
Target: 5'- gUCGAGGUG-CagGUCGCUGAGG-AGCc -3' miRNA: 3'- -AGUUCCACuGagCGGCGACUCUgUCG- -5' |
|||||||
10912 | 3' | -54.5 | NC_002794.1 | + | 129063 | 0.73 | 0.707385 |
Target: 5'- gCGAcGGUGugUCGCgGCUGGcGGCGGa -3' miRNA: 3'- aGUU-CCACugAGCGgCGACU-CUGUCg -5' |
|||||||
10912 | 3' | -54.5 | NC_002794.1 | + | 125735 | 0.68 | 0.925259 |
Target: 5'- -gGAGGcggaGGCggGCCGC-GGGACGGCg -3' miRNA: 3'- agUUCCa---CUGagCGGCGaCUCUGUCG- -5' |
|||||||
10912 | 3' | -54.5 | NC_002794.1 | + | 123438 | 0.68 | 0.919778 |
Target: 5'- ---cGGUGAC-CGUCGCcGAG-CGGCu -3' miRNA: 3'- aguuCCACUGaGCGGCGaCUCuGUCG- -5' |
|||||||
10912 | 3' | -54.5 | NC_002794.1 | + | 121376 | 0.66 | 0.970292 |
Target: 5'- cCGAGccGGC-CGCCGCcGGGACcGCg -3' miRNA: 3'- aGUUCcaCUGaGCGGCGaCUCUGuCG- -5' |
|||||||
10912 | 3' | -54.5 | NC_002794.1 | + | 120053 | 0.66 | 0.9673 |
Target: 5'- gCGGcGGUGGCg-GCCGCgGAGGCcgacgcGGCg -3' miRNA: 3'- aGUU-CCACUGagCGGCGaCUCUG------UCG- -5' |
|||||||
10912 | 3' | -54.5 | NC_002794.1 | + | 116883 | 0.67 | 0.953209 |
Target: 5'- gUCAGGGgGGCgccggCGCCGuCUccGGCGGCc -3' miRNA: 3'- -AGUUCCaCUGa----GCGGC-GAcuCUGUCG- -5' |
|||||||
10912 | 3' | -54.5 | NC_002794.1 | + | 116115 | 0.73 | 0.7173 |
Target: 5'- gUCGAGGUcGAgUcCGCCGCgGcGGCGGCg -3' miRNA: 3'- -AGUUCCA-CUgA-GCGGCGaCuCUGUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home