miRNA display CGI


Results 21 - 40 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10912 3' -54.5 NC_002794.1 + 115984 0.67 0.949132
Target:  5'- aCGGGGa-GCggCGCCGCgGAGACcGCg -3'
miRNA:   3'- aGUUCCacUGa-GCGGCGaCUCUGuCG- -5'
10912 3' -54.5 NC_002794.1 + 114585 0.69 0.867614
Target:  5'- -gAGGGUG-CUCGUCGCUcuGGACgAGCu -3'
miRNA:   3'- agUUCCACuGAGCGGCGAc-UCUG-UCG- -5'
10912 3' -54.5 NC_002794.1 + 114012 0.66 0.970292
Target:  5'- -gGAGGagcGACUCGUacagGC-GGGGCAGCg -3'
miRNA:   3'- agUUCCa--CUGAGCGg---CGaCUCUGUCG- -5'
10912 3' -54.5 NC_002794.1 + 113934 0.68 0.925259
Target:  5'- cCGAGGcGACggGCCGCUGccGGGCuuccuGCa -3'
miRNA:   3'- aGUUCCaCUGagCGGCGAC--UCUGu----CG- -5'
10912 3' -54.5 NC_002794.1 + 108142 0.66 0.973083
Target:  5'- ---cGGcugGAUUCGCCGCcGGGAgcgcCGGCg -3'
miRNA:   3'- aguuCCa--CUGAGCGGCGaCUCU----GUCG- -5'
10912 3' -54.5 NC_002794.1 + 107101 0.69 0.895508
Target:  5'- -gGGGGUGugUCGCUGC-GAGcCGcGCu -3'
miRNA:   3'- agUUCCACugAGCGGCGaCUCuGU-CG- -5'
10912 3' -54.5 NC_002794.1 + 105888 0.67 0.935022
Target:  5'- -gGGGGUgggagagGAgUCGCCGCgGcGGCGGCg -3'
miRNA:   3'- agUUCCA-------CUgAGCGGCGaCuCUGUCG- -5'
10912 3' -54.5 NC_002794.1 + 105425 0.77 0.487588
Target:  5'- cCAGGGUGGCcgcCGCCGCgccGGCGGCg -3'
miRNA:   3'- aGUUCCACUGa--GCGGCGacuCUGUCG- -5'
10912 3' -54.5 NC_002794.1 + 96912 0.69 0.882
Target:  5'- -gGAGGUGGCggaggCGCCGgc--GACAGCa -3'
miRNA:   3'- agUUCCACUGa----GCGGCgacuCUGUCG- -5'
10912 3' -54.5 NC_002794.1 + 92602 0.68 0.91406
Target:  5'- aCGcGGUGGCcuucUCGCCGCUGcuGGC-GCa -3'
miRNA:   3'- aGUuCCACUG----AGCGGCGACu-CUGuCG- -5'
10912 3' -54.5 NC_002794.1 + 92242 0.69 0.867614
Target:  5'- cCAAGGagcccucGGCggCGUCGCUGGcGGCGGCg -3'
miRNA:   3'- aGUUCCa------CUGa-GCGGCGACU-CUGUCG- -5'
10912 3' -54.5 NC_002794.1 + 85260 0.66 0.972812
Target:  5'- gCAAGGUGGgaagagcacacCUCucggcuccggucaGCgGCUGAGACgaGGCg -3'
miRNA:   3'- aGUUCCACU-----------GAG-------------CGgCGACUCUG--UCG- -5'
10912 3' -54.5 NC_002794.1 + 74069 0.8 0.333929
Target:  5'- cUCAAGGUGGCggcccuccUCGCCGagucGGGACAGCu -3'
miRNA:   3'- -AGUUCCACUG--------AGCGGCga--CUCUGUCG- -5'
10912 3' -54.5 NC_002794.1 + 72023 0.67 0.935022
Target:  5'- cCGAGGUcgcgcagccgcuuGAgcugUUCGCCGCUGAcccGCAGCc -3'
miRNA:   3'- aGUUCCA-------------CU----GAGCGGCGACUc--UGUCG- -5'
10912 3' -54.5 NC_002794.1 + 70681 0.68 0.930504
Target:  5'- gCGGcGGUGACguccugUCGCCGCUGGGggucccacccACuGCg -3'
miRNA:   3'- aGUU-CCACUG------AGCGGCGACUC----------UGuCG- -5'
10912 3' -54.5 NC_002794.1 + 66955 0.66 0.970292
Target:  5'- cUCGAGGccggcGAgUCGCuCGCcGGGGgAGCg -3'
miRNA:   3'- -AGUUCCa----CUgAGCG-GCGaCUCUgUCG- -5'
10912 3' -54.5 NC_002794.1 + 55972 0.66 0.96069
Target:  5'- gUCGAGGUGgaugGCguaGCCGCgggcGAGcacCAGCa -3'
miRNA:   3'- -AGUUCCAC----UGag-CGGCGa---CUCu--GUCG- -5'
10912 3' -54.5 NC_002794.1 + 52041 0.67 0.953209
Target:  5'- cUCAAGGaccuGCUCGagaGCUccGAGACGGCc -3'
miRNA:   3'- -AGUUCCac--UGAGCgg-CGA--CUCUGUCG- -5'
10912 3' -54.5 NC_002794.1 + 48472 0.67 0.940286
Target:  5'- gUCAGGGcGAa--GCCGCcG-GGCAGCg -3'
miRNA:   3'- -AGUUCCaCUgagCGGCGaCuCUGUCG- -5'
10912 3' -54.5 NC_002794.1 + 46747 0.66 0.957061
Target:  5'- ------cGACUucCGCCGCUGGaucGACGGCg -3'
miRNA:   3'- aguuccaCUGA--GCGGCGACU---CUGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.