Results 41 - 46 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10912 | 3' | -54.5 | NC_002794.1 | + | 44259 | 0.68 | 0.91406 |
Target: 5'- --cGGGcGGCUCgGCCGCcgGGGACGGa -3' miRNA: 3'- aguUCCaCUGAG-CGGCGa-CUCUGUCg -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 40487 | 0.66 | 0.964101 |
Target: 5'- aUCGAacGGccgGcGCUCGCCGCUcGAGucACGGCc -3' miRNA: 3'- -AGUU--CCa--C-UGAGCGGCGA-CUC--UGUCG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 35051 | 0.71 | 0.801326 |
Target: 5'- -gGAGGUccaccauGAC-CGCCGCUGcGugGGCg -3' miRNA: 3'- agUUCCA-------CUGaGCGGCGACuCugUCG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 32023 | 0.68 | 0.901923 |
Target: 5'- gCAGGG-GACgcggCGCUGCcGAuACAGCg -3' miRNA: 3'- aGUUCCaCUGa---GCGGCGaCUcUGUCG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 13271 | 0.67 | 0.940286 |
Target: 5'- ---uGGUGGagcgGCCGCUGuuGACGGCg -3' miRNA: 3'- aguuCCACUgag-CGGCGACu-CUGUCG- -5' |
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10912 | 3' | -54.5 | NC_002794.1 | + | 3160 | 1.13 | 0.002868 |
Target: 5'- cUCAAGGUGACUCGCCGCUGAGACAGCg -3' miRNA: 3'- -AGUUCCACUGAGCGGCGACUCUGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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