miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10912 5' -49 NC_002794.1 + 108355 0.66 0.999807
Target:  5'- cGGAg--CGGGGAGcGGAGGAggACCGGGc -3'
miRNA:   3'- cCCUaagGCUCUUU-UCUCCU--UGGCUC- -5'
10912 5' -49 NC_002794.1 + 107613 0.66 0.999792
Target:  5'- gGGGAagaCGGGGacgguggcggugacGAAGAGGAGCgCGAa -3'
miRNA:   3'- -CCCUaagGCUCU--------------UUUCUCCUUG-GCUc -5'
10912 5' -49 NC_002794.1 + 40076 0.66 0.999755
Target:  5'- aGGGAaaCCGGGGcGGGGAGGGAaaGAc -3'
miRNA:   3'- -CCCUaaGGCUCU-UUUCUCCUUggCUc -5'
10912 5' -49 NC_002794.1 + 50595 0.66 0.99969
Target:  5'- uGGGuggCCGGcgccGGGGGGAUCGAGa -3'
miRNA:   3'- -CCCuaaGGCUcuuuUCUCCUUGGCUC- -5'
10912 5' -49 NC_002794.1 + 1672 0.66 0.999683
Target:  5'- aGGAagUCCGAGGcgcccaccggccuGAuacGGGGACCGGGg -3'
miRNA:   3'- cCCUa-AGGCUCU-------------UUuc-UCCUUGGCUC- -5'
10912 5' -49 NC_002794.1 + 30010 0.66 0.999645
Target:  5'- cGGcGAccgaCCGAGGAccuGGAGGAgagagcgcgugaacgACCGAGa -3'
miRNA:   3'- -CC-CUaa--GGCUCUUu--UCUCCU---------------UGGCUC- -5'
10912 5' -49 NC_002794.1 + 149462 0.66 0.999612
Target:  5'- aGGGGgcggUCGAGGAgcGAGGGGGGgCGGc -3'
miRNA:   3'- -CCCUaa--GGCUCUU--UUCUCCUUgGCUc -5'
10912 5' -49 NC_002794.1 + 183166 0.66 0.999516
Target:  5'- cGGGcugcCCGAGcc-GGucGGGGACCGAGa -3'
miRNA:   3'- -CCCuaa-GGCUCuuuUC--UCCUUGGCUC- -5'
10912 5' -49 NC_002794.1 + 68577 0.67 0.999401
Target:  5'- cGGcGUUCCGAGAAcaacAGAcGGGACaCGAa -3'
miRNA:   3'- -CCcUAAGGCUCUUu---UCU-CCUUG-GCUc -5'
10912 5' -49 NC_002794.1 + 23881 0.67 0.999263
Target:  5'- cGGAccgcgaacgCCGAGGGcccGGGAGCCGAGu -3'
miRNA:   3'- cCCUaa-------GGCUCUUuucUCCUUGGCUC- -5'
10912 5' -49 NC_002794.1 + 86768 0.67 0.998902
Target:  5'- uGGAUcgCCGGGAAc-GAaccggccgcuccGGAACCGAGa -3'
miRNA:   3'- cCCUAa-GGCUCUUuuCU------------CCUUGGCUC- -5'
10912 5' -49 NC_002794.1 + 188178 0.67 0.998671
Target:  5'- cGGAaucgUCCGAGAugccGGGAuCCGAGu -3'
miRNA:   3'- cCCUa---AGGCUCUuuucUCCUuGGCUC- -5'
10912 5' -49 NC_002794.1 + 136925 0.67 0.998671
Target:  5'- cGGGAgccCCGAGuu--GAcGGcGCCGAGa -3'
miRNA:   3'- -CCCUaa-GGCUCuuuuCU-CCuUGGCUC- -5'
10912 5' -49 NC_002794.1 + 110103 0.68 0.9984
Target:  5'- aGGAgagaaCCGGGggGguGGAGGAACaUGGGa -3'
miRNA:   3'- cCCUaa---GGCUCuuU--UCUCCUUG-GCUC- -5'
10912 5' -49 NC_002794.1 + 44268 0.68 0.998084
Target:  5'- cGGccgCCGGGGAcGGAGGAguccgcgcccGCCGGGc -3'
miRNA:   3'- cCCuaaGGCUCUUuUCUCCU----------UGGCUC- -5'
10912 5' -49 NC_002794.1 + 87012 0.68 0.997717
Target:  5'- uGGGUUCCGGcGAGGGuccgcAGGAuCCGGGg -3'
miRNA:   3'- cCCUAAGGCUcUUUUC-----UCCUuGGCUC- -5'
10912 5' -49 NC_002794.1 + 2036 0.68 0.99747
Target:  5'- cGGGG-UCCGGGGgcguguuccucgccaAAacAGAGGAAguCCGAGa -3'
miRNA:   3'- -CCCUaAGGCUCU---------------UU--UCUCCUU--GGCUC- -5'
10912 5' -49 NC_002794.1 + 105827 0.68 0.997294
Target:  5'- cGGGucggUCGAGc-GAGcGGGACCGAGg -3'
miRNA:   3'- -CCCuaa-GGCUCuuUUCuCCUUGGCUC- -5'
10912 5' -49 NC_002794.1 + 148174 0.68 0.997294
Target:  5'- aGGGggUCgCGAcGGAAGGAGGGgggucuccggcGCCGGc -3'
miRNA:   3'- -CCCuaAG-GCU-CUUUUCUCCU-----------UGGCUc -5'
10912 5' -49 NC_002794.1 + 9072 0.68 0.997294
Target:  5'- aGGcGAU-CCGAGAcuuGGAGAGcGGcgACCGGGa -3'
miRNA:   3'- -CC-CUAaGGCUCU---UUUCUC-CU--UGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.