miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10912 5' -49 NC_002794.1 + 128400 0.68 0.997294
Target:  5'- cGGAUgggCGAGggGAccGGGGAgACCGGGa -3'
miRNA:   3'- cCCUAag-GCUCuuUU--CUCCU-UGGCUC- -5'
10912 5' -49 NC_002794.1 + 1974 0.68 0.997009
Target:  5'- cGGGG-UCCGGGGgcguguuccucacaaAAAuGAGGAAguCCGAGg -3'
miRNA:   3'- -CCCUaAGGCUCU---------------UUU-CUCCUU--GGCUC- -5'
10912 5' -49 NC_002794.1 + 10033 0.68 0.996806
Target:  5'- aGGGGccaCCGAcagccaGAuGAGAGGAgccACCGAGa -3'
miRNA:   3'- -CCCUaa-GGCU------CUuUUCUCCU---UGGCUC- -5'
10912 5' -49 NC_002794.1 + 1576 0.69 0.996481
Target:  5'- cGGGG-UCCGGGGgcGuguuccucgccaaaaAAGAGGAAguCCGAGg -3'
miRNA:   3'- -CCCUaAGGCUCU--U---------------UUCUCCUU--GGCUC- -5'
10912 5' -49 NC_002794.1 + 176996 0.69 0.996249
Target:  5'- gGGGAca-CGAGAGAcguuGAGGAcuCCGGGa -3'
miRNA:   3'- -CCCUaagGCUCUUUu---CUCCUu-GGCUC- -5'
10912 5' -49 NC_002794.1 + 41314 0.69 0.994894
Target:  5'- uGGGGUcUCCGAGGucuccGAGGucuccuCCGGGg -3'
miRNA:   3'- -CCCUA-AGGCUCUuuu--CUCCuu----GGCUC- -5'
10912 5' -49 NC_002794.1 + 55343 0.69 0.994081
Target:  5'- cGGGGUcgcgcCCGAGGcgGccGAGGcGGCCGAGg -3'
miRNA:   3'- -CCCUAa----GGCUCU--UuuCUCC-UUGGCUC- -5'
10912 5' -49 NC_002794.1 + 3483 0.69 0.993817
Target:  5'- uGGGAaa-UGAGGAaccgcgcccggucaAAGAGGAACCGGu -3'
miRNA:   3'- -CCCUaagGCUCUU--------------UUCUCCUUGGCUc -5'
10912 5' -49 NC_002794.1 + 109139 0.7 0.993167
Target:  5'- cGGA--CCGAGGAGGG-GGAGgCGGGg -3'
miRNA:   3'- cCCUaaGGCUCUUUUCuCCUUgGCUC- -5'
10912 5' -49 NC_002794.1 + 2850 0.7 0.992143
Target:  5'- uGGGAUgauUCUGAGAAAAGGaGAAguuggcCCGGGg -3'
miRNA:   3'- -CCCUA---AGGCUCUUUUCUcCUU------GGCUC- -5'
10912 5' -49 NC_002794.1 + 158703 0.7 0.989732
Target:  5'- uGGGggUCCGuGGGAuGAGGGucUCGAGa -3'
miRNA:   3'- -CCCuaAGGCuCUUUuCUCCUu-GGCUC- -5'
10912 5' -49 NC_002794.1 + 180819 0.7 0.988328
Target:  5'- cGGAcUCUGGGcgGGGAGGAGCCcGGc -3'
miRNA:   3'- cCCUaAGGCUCuuUUCUCCUUGGcUC- -5'
10912 5' -49 NC_002794.1 + 145910 0.71 0.986779
Target:  5'- gGGGAgucgaccgcgCCGAGc--GGAGGGGCCGGc -3'
miRNA:   3'- -CCCUaa--------GGCUCuuuUCUCCUUGGCUc -5'
10912 5' -49 NC_002794.1 + 128639 0.71 0.985076
Target:  5'- -cGAUUCCGAGGAAgaGGucuuguGGGACCGGc -3'
miRNA:   3'- ccCUAAGGCUCUUU--UCu-----CCUUGGCUc -5'
10912 5' -49 NC_002794.1 + 187973 0.71 0.978961
Target:  5'- cGGGAggCCGcucauugcGGGAGAGAcGAGCCGAa -3'
miRNA:   3'- -CCCUaaGGC--------UCUUUUCUcCUUGGCUc -5'
10912 5' -49 NC_002794.1 + 179065 0.71 0.978961
Target:  5'- cGGGUUCUGGGAc--GAGGGACCa-- -3'
miRNA:   3'- cCCUAAGGCUCUuuuCUCCUUGGcuc -5'
10912 5' -49 NC_002794.1 + 32617 0.74 0.930705
Target:  5'- gGGGAUcgggcccgCCGAcGAAGAGGGGGgcgacgACCGGGg -3'
miRNA:   3'- -CCCUAa-------GGCU-CUUUUCUCCU------UGGCUC- -5'
10912 5' -49 NC_002794.1 + 95787 0.75 0.887875
Target:  5'- cGGGG---CGAGAGGcgcggcGGAGGAACCGGGg -3'
miRNA:   3'- -CCCUaagGCUCUUU------UCUCCUUGGCUC- -5'
10912 5' -49 NC_002794.1 + 1427 0.76 0.873476
Target:  5'- aGGGAcgaCCGGGA---GGGGGACCGGGg -3'
miRNA:   3'- -CCCUaa-GGCUCUuuuCUCCUUGGCUC- -5'
10912 5' -49 NC_002794.1 + 149516 0.76 0.847774
Target:  5'- cGGGGUcgucgCCGGGAgcggaccuggggcgGAGGAuGGAGCCGAGu -3'
miRNA:   3'- -CCCUAa----GGCUCU--------------UUUCU-CCUUGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.