miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10912 5' -49 NC_002794.1 + 1427 0.76 0.873476
Target:  5'- aGGGAcgaCCGGGA---GGGGGACCGGGg -3'
miRNA:   3'- -CCCUaa-GGCUCUuuuCUCCUUGGCUC- -5'
10912 5' -49 NC_002794.1 + 1576 0.69 0.996481
Target:  5'- cGGGG-UCCGGGGgcGuguuccucgccaaaaAAGAGGAAguCCGAGg -3'
miRNA:   3'- -CCCUaAGGCUCU--U---------------UUCUCCUU--GGCUC- -5'
10912 5' -49 NC_002794.1 + 1672 0.66 0.999683
Target:  5'- aGGAagUCCGAGGcgcccaccggccuGAuacGGGGACCGGGg -3'
miRNA:   3'- cCCUa-AGGCUCU-------------UUuc-UCCUUGGCUC- -5'
10912 5' -49 NC_002794.1 + 1974 0.68 0.997009
Target:  5'- cGGGG-UCCGGGGgcguguuccucacaaAAAuGAGGAAguCCGAGg -3'
miRNA:   3'- -CCCUaAGGCUCU---------------UUU-CUCCUU--GGCUC- -5'
10912 5' -49 NC_002794.1 + 2036 0.68 0.99747
Target:  5'- cGGGG-UCCGGGGgcguguuccucgccaAAacAGAGGAAguCCGAGa -3'
miRNA:   3'- -CCCUaAGGCUCU---------------UU--UCUCCUU--GGCUC- -5'
10912 5' -49 NC_002794.1 + 2850 0.7 0.992143
Target:  5'- uGGGAUgauUCUGAGAAAAGGaGAAguuggcCCGGGg -3'
miRNA:   3'- -CCCUA---AGGCUCUUUUCUcCUU------GGCUC- -5'
10912 5' -49 NC_002794.1 + 3010 1.03 0.04622
Target:  5'- gGGGAUUCUGAGAAAAGGGGAACCGGGc -3'
miRNA:   3'- -CCCUAAGGCUCUUUUCUCCUUGGCUC- -5'
10912 5' -49 NC_002794.1 + 3198 1.12 0.014254
Target:  5'- aGGGAUUCCGAGAAAAGAGGAACCGAGc -3'
miRNA:   3'- -CCCUAAGGCUCUUUUCUCCUUGGCUC- -5'
10912 5' -49 NC_002794.1 + 3483 0.69 0.993817
Target:  5'- uGGGAaa-UGAGGAaccgcgcccggucaAAGAGGAACCGGu -3'
miRNA:   3'- -CCCUaagGCUCUU--------------UUCUCCUUGGCUc -5'
10912 5' -49 NC_002794.1 + 9072 0.68 0.997294
Target:  5'- aGGcGAU-CCGAGAcuuGGAGAGcGGcgACCGGGa -3'
miRNA:   3'- -CC-CUAaGGCUCU---UUUCUC-CU--UGGCUC- -5'
10912 5' -49 NC_002794.1 + 10033 0.68 0.996806
Target:  5'- aGGGGccaCCGAcagccaGAuGAGAGGAgccACCGAGa -3'
miRNA:   3'- -CCCUaa-GGCU------CUuUUCUCCU---UGGCUC- -5'
10912 5' -49 NC_002794.1 + 23881 0.67 0.999263
Target:  5'- cGGAccgcgaacgCCGAGGGcccGGGAGCCGAGu -3'
miRNA:   3'- cCCUaa-------GGCUCUUuucUCCUUGGCUC- -5'
10912 5' -49 NC_002794.1 + 30010 0.66 0.999645
Target:  5'- cGGcGAccgaCCGAGGAccuGGAGGAgagagcgcgugaacgACCGAGa -3'
miRNA:   3'- -CC-CUaa--GGCUCUUu--UCUCCU---------------UGGCUC- -5'
10912 5' -49 NC_002794.1 + 32617 0.74 0.930705
Target:  5'- gGGGAUcgggcccgCCGAcGAAGAGGGGGgcgacgACCGGGg -3'
miRNA:   3'- -CCCUAa-------GGCU-CUUUUCUCCU------UGGCUC- -5'
10912 5' -49 NC_002794.1 + 40076 0.66 0.999755
Target:  5'- aGGGAaaCCGGGGcGGGGAGGGAaaGAc -3'
miRNA:   3'- -CCCUaaGGCUCU-UUUCUCCUUggCUc -5'
10912 5' -49 NC_002794.1 + 41314 0.69 0.994894
Target:  5'- uGGGGUcUCCGAGGucuccGAGGucuccuCCGGGg -3'
miRNA:   3'- -CCCUA-AGGCUCUuuu--CUCCuu----GGCUC- -5'
10912 5' -49 NC_002794.1 + 44268 0.68 0.998084
Target:  5'- cGGccgCCGGGGAcGGAGGAguccgcgcccGCCGGGc -3'
miRNA:   3'- cCCuaaGGCUCUUuUCUCCU----------UGGCUC- -5'
10912 5' -49 NC_002794.1 + 50595 0.66 0.99969
Target:  5'- uGGGuggCCGGcgccGGGGGGAUCGAGa -3'
miRNA:   3'- -CCCuaaGGCUcuuuUCUCCUUGGCUC- -5'
10912 5' -49 NC_002794.1 + 55343 0.69 0.994081
Target:  5'- cGGGGUcgcgcCCGAGGcgGccGAGGcGGCCGAGg -3'
miRNA:   3'- -CCCUAa----GGCUCU--UuuCUCC-UUGGCUC- -5'
10912 5' -49 NC_002794.1 + 68577 0.67 0.999401
Target:  5'- cGGcGUUCCGAGAAcaacAGAcGGGACaCGAa -3'
miRNA:   3'- -CCcUAAGGCUCUUu---UCU-CCUUG-GCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.