miRNA display CGI


Results 1 - 20 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10913 3' -67 NC_002794.1 + 66737 0.65 0.531662
Target:  5'- gCCGGCgGUggCGGCgGCGCGUacgaccgcuggaCCAGCGa -3'
miRNA:   3'- -GGCCGgCG--GCCG-CGCGCAgg----------GGUCGU- -5'
10913 3' -67 NC_002794.1 + 125321 0.66 0.526281
Target:  5'- cCCGcGCCgaGCCGGaGCGCG-CCacggcgcaCCGGCAg -3'
miRNA:   3'- -GGC-CGG--CGGCCgCGCGCaGG--------GGUCGU- -5'
10913 3' -67 NC_002794.1 + 106070 0.66 0.526281
Target:  5'- -gGGCCGCCGGCaCGCGgcUUUUCuGCGc -3'
miRNA:   3'- ggCCGGCGGCCGcGCGC--AGGGGuCGU- -5'
10913 3' -67 NC_002794.1 + 54136 0.66 0.526281
Target:  5'- uUCGGCaCGUuguUGGCcagcCGCGUCCCCaccAGCGc -3'
miRNA:   3'- -GGCCG-GCG---GCCGc---GCGCAGGGG---UCGU- -5'
10913 3' -67 NC_002794.1 + 132910 0.66 0.526281
Target:  5'- gCGGCgGCCGGUcacuCGUUCCCGGUu -3'
miRNA:   3'- gGCCGgCGGCCGcgc-GCAGGGGUCGu -5'
10913 3' -67 NC_002794.1 + 35511 0.66 0.526281
Target:  5'- gUGGCCGCCGuGCccaGCGUCUacauCCuGCAc -3'
miRNA:   3'- gGCCGGCGGC-CGcg-CGCAGG----GGuCGU- -5'
10913 3' -67 NC_002794.1 + 11853 0.66 0.526281
Target:  5'- uCCGaCCGCCGGCGacgacCGCccgCCCC-GCGa -3'
miRNA:   3'- -GGCcGGCGGCCGC-----GCGca-GGGGuCGU- -5'
10913 3' -67 NC_002794.1 + 47958 0.66 0.526281
Target:  5'- cCCGG-CGCCGGCuGgGCGaCCgCCGcGCGc -3'
miRNA:   3'- -GGCCgGCGGCCG-CgCGCaGG-GGU-CGU- -5'
10913 3' -67 NC_002794.1 + 59652 0.66 0.526281
Target:  5'- cCCGGUCGCCacGGCGCuGCagagCCgCCuGCGc -3'
miRNA:   3'- -GGCCGGCGG--CCGCG-CGca--GG-GGuCGU- -5'
10913 3' -67 NC_002794.1 + 115193 0.66 0.526281
Target:  5'- gCCGGCggucgaGCCGGCGUaGCG-CCUCcGCc -3'
miRNA:   3'- -GGCCGg-----CGGCCGCG-CGCaGGGGuCGu -5'
10913 3' -67 NC_002794.1 + 48633 0.66 0.526281
Target:  5'- gCGGCCGUCGGgGCccGCGagCCgCC-GCAg -3'
miRNA:   3'- gGCCGGCGGCCgCG--CGCa-GG-GGuCGU- -5'
10913 3' -67 NC_002794.1 + 189140 0.66 0.526281
Target:  5'- -gGGCCGCCaGCGCcagacucUCCCgCGGCAg -3'
miRNA:   3'- ggCCGGCGGcCGCGcgc----AGGG-GUCGU- -5'
10913 3' -67 NC_002794.1 + 180671 0.66 0.526281
Target:  5'- gCCGGggaacUCGCCGGC-CGC--UCCCGGCGc -3'
miRNA:   3'- -GGCC-----GGCGGCCGcGCGcaGGGGUCGU- -5'
10913 3' -67 NC_002794.1 + 137572 0.66 0.517359
Target:  5'- gCCGucGCCGCCGGgGCcggaguGCGgggagccgCCgCCGGCGg -3'
miRNA:   3'- -GGC--CGGCGGCCgCG------CGCa-------GG-GGUCGU- -5'
10913 3' -67 NC_002794.1 + 879 0.66 0.517359
Target:  5'- gCGGUCGgCGuGCGCGCGggCCgGGUg -3'
miRNA:   3'- gGCCGGCgGC-CGCGCGCagGGgUCGu -5'
10913 3' -67 NC_002794.1 + 65918 0.66 0.517359
Target:  5'- aCCGucGUCGCCGGCG-GCGguggCgUCGGCGg -3'
miRNA:   3'- -GGC--CGGCGGCCGCgCGCa---GgGGUCGU- -5'
10913 3' -67 NC_002794.1 + 151207 0.66 0.517359
Target:  5'- gCGcGCCGCCGGCuacCGgGUCUUgGGCc -3'
miRNA:   3'- gGC-CGGCGGCCGc--GCgCAGGGgUCGu -5'
10913 3' -67 NC_002794.1 + 100311 0.66 0.517359
Target:  5'- uCC-GCCGCUGGCacGCGCGg--CCGGCGc -3'
miRNA:   3'- -GGcCGGCGGCCG--CGCGCaggGGUCGU- -5'
10913 3' -67 NC_002794.1 + 58456 0.66 0.517359
Target:  5'- cCUGGCCGCgcUGGCGCuGCacgaCCCgCAGUAc -3'
miRNA:   3'- -GGCCGGCG--GCCGCG-CGca--GGG-GUCGU- -5'
10913 3' -67 NC_002794.1 + 21881 0.66 0.517359
Target:  5'- gCCGGCCGCgGG---GUGUCCgCGGCc -3'
miRNA:   3'- -GGCCGGCGgCCgcgCGCAGGgGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.