miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10913 5' -55.1 NC_002794.1 + 184808 0.66 0.967023
Target:  5'- gGCUCagcagcgucaCGGGgcaCGCGUCCGGGCg--- -3'
miRNA:   3'- -CGAGga--------GCUCa--GCGCAGGCCUGauau -5'
10913 5' -55.1 NC_002794.1 + 113984 0.66 0.967023
Target:  5'- cGCUCCUCGAGcagC-CGUUCGaGGCg--- -3'
miRNA:   3'- -CGAGGAGCUCa--GcGCAGGC-CUGauau -5'
10913 5' -55.1 NC_002794.1 + 111023 0.66 0.963834
Target:  5'- aGCUCC-CGGucGUCGUGaUCCGG-CUGg- -3'
miRNA:   3'- -CGAGGaGCU--CAGCGC-AGGCCuGAUau -5'
10913 5' -55.1 NC_002794.1 + 89943 0.66 0.960435
Target:  5'- gGCUUCUCGGgagccgacGUCgagGCGUUCGGACcGUGg -3'
miRNA:   3'- -CGAGGAGCU--------CAG---CGCAGGCCUGaUAU- -5'
10913 5' -55.1 NC_002794.1 + 144970 0.66 0.956822
Target:  5'- gGCgCCUCGAcgguGUCGCGaccggcgCCGGGCg--- -3'
miRNA:   3'- -CGaGGAGCU----CAGCGCa------GGCCUGauau -5'
10913 5' -55.1 NC_002794.1 + 21567 0.66 0.95299
Target:  5'- cCUCCUCGGGUucgucgugCGCGaCCGGGgcgguCUGUGc -3'
miRNA:   3'- cGAGGAGCUCA--------GCGCaGGCCU-----GAUAU- -5'
10913 5' -55.1 NC_002794.1 + 183147 0.66 0.95299
Target:  5'- aGCUCCgCGGacaCGCGgCCGGGCUGc- -3'
miRNA:   3'- -CGAGGaGCUca-GCGCaGGCCUGAUau -5'
10913 5' -55.1 NC_002794.1 + 109476 0.66 0.948936
Target:  5'- uCUCCUCGGa--GCGUCCGaGACg--- -3'
miRNA:   3'- cGAGGAGCUcagCGCAGGC-CUGauau -5'
10913 5' -55.1 NC_002794.1 + 67180 0.67 0.944656
Target:  5'- aGC-CCgaUCGGGUCggaccgaaaaGCGUCCGGGCg--- -3'
miRNA:   3'- -CGaGG--AGCUCAG----------CGCAGGCCUGauau -5'
10913 5' -55.1 NC_002794.1 + 14999 0.67 0.935409
Target:  5'- aGCUCCUCGGG-CG-GUCUcGGCUGg- -3'
miRNA:   3'- -CGAGGAGCUCaGCgCAGGcCUGAUau -5'
10913 5' -55.1 NC_002794.1 + 11970 0.67 0.925237
Target:  5'- cGCUCgUgGAGaUgGCGUCCGGcgGCUGg- -3'
miRNA:   3'- -CGAGgAgCUC-AgCGCAGGCC--UGAUau -5'
10913 5' -55.1 NC_002794.1 + 65140 0.68 0.919246
Target:  5'- aGCUCCUCGgcgacugGGUCGCcgucccGUCCGuGGCg--- -3'
miRNA:   3'- -CGAGGAGC-------UCAGCG------CAGGC-CUGauau -5'
10913 5' -55.1 NC_002794.1 + 89795 0.68 0.919246
Target:  5'- aGUUCCUCGAcgggaucGUCGCGUgUGGGgUGc- -3'
miRNA:   3'- -CGAGGAGCU-------CAGCGCAgGCCUgAUau -5'
10913 5' -55.1 NC_002794.1 + 133371 0.68 0.914136
Target:  5'- cGCUCgUCG-GUCGuCGUCCGG-Cg--- -3'
miRNA:   3'- -CGAGgAGCuCAGC-GCAGGCCuGauau -5'
10913 5' -55.1 NC_002794.1 + 19802 0.69 0.882387
Target:  5'- uGCUCCgcUCGGaccgCGCG-CCGGACUGg- -3'
miRNA:   3'- -CGAGG--AGCUca--GCGCaGGCCUGAUau -5'
10913 5' -55.1 NC_002794.1 + 135968 0.69 0.868152
Target:  5'- cCUCCUCGAGcCcgGCG-CCGGGCUc-- -3'
miRNA:   3'- cGAGGAGCUCaG--CGCaGGCCUGAuau -5'
10913 5' -55.1 NC_002794.1 + 138825 0.71 0.776508
Target:  5'- cGCggUCUCGAGcUCGCGaCCGGGCUc-- -3'
miRNA:   3'- -CGa-GGAGCUC-AGCGCaGGCCUGAuau -5'
10913 5' -55.1 NC_002794.1 + 2652 1.09 0.004709
Target:  5'- aGCUCCUCGAGUCGCGUCCGGACUAUAa -3'
miRNA:   3'- -CGAGGAGCUCAGCGCAGGCCUGAUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.