Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10913 | 5' | -55.1 | NC_002794.1 | + | 184808 | 0.66 | 0.967023 |
Target: 5'- gGCUCagcagcgucaCGGGgcaCGCGUCCGGGCg--- -3' miRNA: 3'- -CGAGga--------GCUCa--GCGCAGGCCUGauau -5' |
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10913 | 5' | -55.1 | NC_002794.1 | + | 135968 | 0.69 | 0.868152 |
Target: 5'- cCUCCUCGAGcCcgGCG-CCGGGCUc-- -3' miRNA: 3'- cGAGGAGCUCaG--CGCaGGCCUGAuau -5' |
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10913 | 5' | -55.1 | NC_002794.1 | + | 138825 | 0.71 | 0.776508 |
Target: 5'- cGCggUCUCGAGcUCGCGaCCGGGCUc-- -3' miRNA: 3'- -CGa-GGAGCUC-AGCGCaGGCCUGAuau -5' |
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10913 | 5' | -55.1 | NC_002794.1 | + | 2652 | 1.09 | 0.004709 |
Target: 5'- aGCUCCUCGAGUCGCGUCCGGACUAUAa -3' miRNA: 3'- -CGAGGAGCUCAGCGCAGGCCUGAUAU- -5' |
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10913 | 5' | -55.1 | NC_002794.1 | + | 133371 | 0.68 | 0.914136 |
Target: 5'- cGCUCgUCG-GUCGuCGUCCGG-Cg--- -3' miRNA: 3'- -CGAGgAGCuCAGC-GCAGGCCuGauau -5' |
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10913 | 5' | -55.1 | NC_002794.1 | + | 65140 | 0.68 | 0.919246 |
Target: 5'- aGCUCCUCGgcgacugGGUCGCcgucccGUCCGuGGCg--- -3' miRNA: 3'- -CGAGGAGC-------UCAGCG------CAGGC-CUGauau -5' |
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10913 | 5' | -55.1 | NC_002794.1 | + | 89795 | 0.68 | 0.919246 |
Target: 5'- aGUUCCUCGAcgggaucGUCGCGUgUGGGgUGc- -3' miRNA: 3'- -CGAGGAGCU-------CAGCGCAgGCCUgAUau -5' |
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10913 | 5' | -55.1 | NC_002794.1 | + | 11970 | 0.67 | 0.925237 |
Target: 5'- cGCUCgUgGAGaUgGCGUCCGGcgGCUGg- -3' miRNA: 3'- -CGAGgAgCUC-AgCGCAGGCC--UGAUau -5' |
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10913 | 5' | -55.1 | NC_002794.1 | + | 21567 | 0.66 | 0.95299 |
Target: 5'- cCUCCUCGGGUucgucgugCGCGaCCGGGgcgguCUGUGc -3' miRNA: 3'- cGAGGAGCUCA--------GCGCaGGCCU-----GAUAU- -5' |
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10913 | 5' | -55.1 | NC_002794.1 | + | 109476 | 0.66 | 0.948936 |
Target: 5'- uCUCCUCGGa--GCGUCCGaGACg--- -3' miRNA: 3'- cGAGGAGCUcagCGCAGGC-CUGauau -5' |
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10913 | 5' | -55.1 | NC_002794.1 | + | 67180 | 0.67 | 0.944656 |
Target: 5'- aGC-CCgaUCGGGUCggaccgaaaaGCGUCCGGGCg--- -3' miRNA: 3'- -CGaGG--AGCUCAG----------CGCAGGCCUGauau -5' |
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10913 | 5' | -55.1 | NC_002794.1 | + | 14999 | 0.67 | 0.935409 |
Target: 5'- aGCUCCUCGGG-CG-GUCUcGGCUGg- -3' miRNA: 3'- -CGAGGAGCUCaGCgCAGGcCUGAUau -5' |
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10913 | 5' | -55.1 | NC_002794.1 | + | 183147 | 0.66 | 0.95299 |
Target: 5'- aGCUCCgCGGacaCGCGgCCGGGCUGc- -3' miRNA: 3'- -CGAGGaGCUca-GCGCaGGCCUGAUau -5' |
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10913 | 5' | -55.1 | NC_002794.1 | + | 144970 | 0.66 | 0.956822 |
Target: 5'- gGCgCCUCGAcgguGUCGCGaccggcgCCGGGCg--- -3' miRNA: 3'- -CGaGGAGCU----CAGCGCa------GGCCUGauau -5' |
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10913 | 5' | -55.1 | NC_002794.1 | + | 89943 | 0.66 | 0.960435 |
Target: 5'- gGCUUCUCGGgagccgacGUCgagGCGUUCGGACcGUGg -3' miRNA: 3'- -CGAGGAGCU--------CAG---CGCAGGCCUGaUAU- -5' |
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10913 | 5' | -55.1 | NC_002794.1 | + | 111023 | 0.66 | 0.963834 |
Target: 5'- aGCUCC-CGGucGUCGUGaUCCGG-CUGg- -3' miRNA: 3'- -CGAGGaGCU--CAGCGC-AGGCCuGAUau -5' |
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10913 | 5' | -55.1 | NC_002794.1 | + | 113984 | 0.66 | 0.967023 |
Target: 5'- cGCUCCUCGAGcagC-CGUUCGaGGCg--- -3' miRNA: 3'- -CGAGGAGCUCa--GcGCAGGC-CUGauau -5' |
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10913 | 5' | -55.1 | NC_002794.1 | + | 19802 | 0.69 | 0.882387 |
Target: 5'- uGCUCCgcUCGGaccgCGCG-CCGGACUGg- -3' miRNA: 3'- -CGAGG--AGCUca--GCGCaGGCCUGAUau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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