miRNA display CGI


Results 1 - 20 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10914 3' -48.2 NC_002794.1 + 80588 0.66 0.999842
Target:  5'- gGGCuGAcgGAcGAGAaccugacggacggacUCUGccuGCCGGCCg -3'
miRNA:   3'- -UCGuUUuaCUaCUUU---------------AGAC---CGGCCGG- -5'
10914 3' -48.2 NC_002794.1 + 192617 0.66 0.999825
Target:  5'- cGCcAGGUGcgGAcAGUC-GGgCGGCCg -3'
miRNA:   3'- uCGuUUUACuaCU-UUAGaCCgGCCGG- -5'
10914 3' -48.2 NC_002794.1 + 48059 0.66 0.999825
Target:  5'- gGGCAcgGcGcUGA----UGGCCGGCCa -3'
miRNA:   3'- -UCGUuuUaCuACUuuagACCGGCCGG- -5'
10914 3' -48.2 NC_002794.1 + 124496 0.66 0.999825
Target:  5'- cGCcg---GAUGGAGUC-GcGUCGGCCg -3'
miRNA:   3'- uCGuuuuaCUACUUUAGaC-CGGCCGG- -5'
10914 3' -48.2 NC_002794.1 + 126025 0.66 0.999821
Target:  5'- -------cGAcGAGAUCUGGCCgaacuucGGCCu -3'
miRNA:   3'- ucguuuuaCUaCUUUAGACCGG-------CCGG- -5'
10914 3' -48.2 NC_002794.1 + 56791 0.66 0.999811
Target:  5'- cGCAugGAAUgGGUGAccuuccuguccaccGcgCUGGCCcuGGCCg -3'
miRNA:   3'- uCGU--UUUA-CUACU--------------UuaGACCGG--CCGG- -5'
10914 3' -48.2 NC_002794.1 + 76938 0.66 0.999776
Target:  5'- cGCAccAUGAcgaccgcgGAGacgccGUCcGGCCGGCCc -3'
miRNA:   3'- uCGUuuUACUa-------CUU-----UAGaCCGGCCGG- -5'
10914 3' -48.2 NC_002794.1 + 114243 0.66 0.999776
Target:  5'- cGuCGAGGUGGUGAAagagcGUCUccgggGGCgGGUCg -3'
miRNA:   3'- uC-GUUUUACUACUU-----UAGA-----CCGgCCGG- -5'
10914 3' -48.2 NC_002794.1 + 16715 0.66 0.999776
Target:  5'- cGCcguccGA-GGAGUCUGcGCCGGCUc -3'
miRNA:   3'- uCGuuuuaCUaCUUUAGAC-CGGCCGG- -5'
10914 3' -48.2 NC_002794.1 + 144745 0.66 0.999715
Target:  5'- cAGCAuuuccaccGGUGGuucUGGGAacgcagCUGGCCGGCg -3'
miRNA:   3'- -UCGUu-------UUACU---ACUUUa-----GACCGGCCGg -5'
10914 3' -48.2 NC_002794.1 + 119754 0.66 0.999715
Target:  5'- cGCAGcuccgGAccAGGUCgcGGCCGGCCu -3'
miRNA:   3'- uCGUUuua--CUacUUUAGa-CCGGCCGG- -5'
10914 3' -48.2 NC_002794.1 + 35603 0.66 0.999639
Target:  5'- gAGCGAcAUGA----AUCUGGUCaGCCu -3'
miRNA:   3'- -UCGUUuUACUacuuUAGACCGGcCGG- -5'
10914 3' -48.2 NC_002794.1 + 4068 0.66 0.999631
Target:  5'- cGGCAAug-GGUGAGucuAUCucggcuuuauuguUGGCgGGCCc -3'
miRNA:   3'- -UCGUUuuaCUACUU---UAG-------------ACCGgCCGG- -5'
10914 3' -48.2 NC_002794.1 + 3226 0.67 0.999435
Target:  5'- cAGCAAAAUGggGAAG-C-GGgCGGUCc -3'
miRNA:   3'- -UCGUUUUACuaCUUUaGaCCgGCCGG- -5'
10914 3' -48.2 NC_002794.1 + 146866 0.67 0.999435
Target:  5'- cGCGuucGGGUGggGGGcgC-GGUCGGCCg -3'
miRNA:   3'- uCGU---UUUACuaCUUuaGaCCGGCCGG- -5'
10914 3' -48.2 NC_002794.1 + 178172 0.67 0.999384
Target:  5'- cGGCucgccuucgGAgaGAAGUCUgcGGCCGGCUg -3'
miRNA:   3'- -UCGuuuua----CUa-CUUUAGA--CCGGCCGG- -5'
10914 3' -48.2 NC_002794.1 + 126136 0.67 0.9993
Target:  5'- -------cGccGGuuUCUGGCCGGCCc -3'
miRNA:   3'- ucguuuuaCuaCUuuAGACCGGCCGG- -5'
10914 3' -48.2 NC_002794.1 + 126243 0.67 0.9993
Target:  5'- uGGCGAucGUGGcgcgcGAGGUCggcGGCUGGCUg -3'
miRNA:   3'- -UCGUUu-UACUa----CUUUAGa--CCGGCCGG- -5'
10914 3' -48.2 NC_002794.1 + 150950 0.67 0.999285
Target:  5'- cGCuGGGUGuucGAGAUCUacgaccugcccucGGCCGGUCu -3'
miRNA:   3'- uCGuUUUACua-CUUUAGA-------------CCGGCCGG- -5'
10914 3' -48.2 NC_002794.1 + 129688 0.67 0.999285
Target:  5'- cGCGGGGUGcUGGAcaccauguggggcAUCcGGCCGGUUa -3'
miRNA:   3'- uCGUUUUACuACUU-------------UAGaCCGGCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.