miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10914 3' -48.2 NC_002794.1 + 2318 1.13 0.011562
Target:  5'- gAGCAAAAUGAUGAAAUCUGGCCGGCCc -3'
miRNA:   3'- -UCGUUUUACUACUUUAGACCGGCCGG- -5'
10914 3' -48.2 NC_002794.1 + 160961 0.77 0.833825
Target:  5'- cGGUcuuuGGAAUaGGUGAcucgguUCUGGCCGGCCg -3'
miRNA:   3'- -UCG----UUUUA-CUACUuu----AGACCGGCCGG- -5'
10914 3' -48.2 NC_002794.1 + 104874 0.74 0.932682
Target:  5'- cAGCAGGcgcGUGAAG-CgGGCCGGCCg -3'
miRNA:   3'- -UCGUUUuacUACUUUaGaCCGGCCGG- -5'
10914 3' -48.2 NC_002794.1 + 102387 0.73 0.947383
Target:  5'- cGCGAcGUGGUGGAA-CUGGUcuuccgcgacgCGGCCg -3'
miRNA:   3'- uCGUUuUACUACUUUaGACCG-----------GCCGG- -5'
10914 3' -48.2 NC_002794.1 + 149193 0.73 0.959789
Target:  5'- gAGCAGAGaaacGUGAGcuAUCcGGCUGGCCg -3'
miRNA:   3'- -UCGUUUUac--UACUU--UAGaCCGGCCGG- -5'
10914 3' -48.2 NC_002794.1 + 90846 0.73 0.963433
Target:  5'- gGGCGGcGUGcUGAcgaaAGUCacuuccaugUGGCCGGCCg -3'
miRNA:   3'- -UCGUUuUACuACU----UUAG---------ACCGGCCGG- -5'
10914 3' -48.2 NC_002794.1 + 139874 0.72 0.970015
Target:  5'- gAGCAGGuUGAUGcAAGUCUcggugaugcgGGCCaGCCg -3'
miRNA:   3'- -UCGUUUuACUAC-UUUAGA----------CCGGcCGG- -5'
10914 3' -48.2 NC_002794.1 + 122574 0.71 0.98056
Target:  5'- cAGCGgcugcuggGGAUGAUGAAGgacgGGCUGGCg -3'
miRNA:   3'- -UCGU--------UUUACUACUUUaga-CCGGCCGg -5'
10914 3' -48.2 NC_002794.1 + 140958 0.71 0.982697
Target:  5'- cGCGGAGUGcGUGAGGU-UGGCCGaGCg -3'
miRNA:   3'- uCGUUUUAC-UACUUUAgACCGGC-CGg -5'
10914 3' -48.2 NC_002794.1 + 132731 0.71 0.986435
Target:  5'- uGCAAAAUGGguccgGcgGagUGGCCGGCa -3'
miRNA:   3'- uCGUUUUACUa----CuuUagACCGGCCGg -5'
10914 3' -48.2 NC_002794.1 + 145509 0.71 0.986435
Target:  5'- uGCGAAggGGUGcg--CgaGGCCGGCCc -3'
miRNA:   3'- uCGUUUuaCUACuuuaGa-CCGGCCGG- -5'
10914 3' -48.2 NC_002794.1 + 53622 0.7 0.989519
Target:  5'- cAGCGucgGAcgGAcGAGGUC-GGCCGaGCCg -3'
miRNA:   3'- -UCGU---UUuaCUaCUUUAGaCCGGC-CGG- -5'
10914 3' -48.2 NC_002794.1 + 138971 0.7 0.993088
Target:  5'- cGGCGGAcgGGuUGGc--CUGGCgGGCCu -3'
miRNA:   3'- -UCGUUUuaCU-ACUuuaGACCGgCCGG- -5'
10914 3' -48.2 NC_002794.1 + 89825 0.69 0.994033
Target:  5'- uGCGuccUGggGAAcgaGUCggucGGCCGGCCg -3'
miRNA:   3'- uCGUuuuACuaCUU---UAGa---CCGGCCGG- -5'
10914 3' -48.2 NC_002794.1 + 189785 0.69 0.996012
Target:  5'- cGCGGGAUGcgGAAAUCgccgucgaaccccGGCgGGCg -3'
miRNA:   3'- uCGUUUUACuaCUUUAGa------------CCGgCCGg -5'
10914 3' -48.2 NC_002794.1 + 92527 0.69 0.996668
Target:  5'- -cCGAGGUGcgcAUGAAGUCcaaccgcgacgaggUGGCCGGCg -3'
miRNA:   3'- ucGUUUUAC---UACUUUAG--------------ACCGGCCGg -5'
10914 3' -48.2 NC_002794.1 + 127981 0.69 0.996668
Target:  5'- uGGUGGuGUGGUGguGUCUGGgcggacgaccgucgUCGGCCg -3'
miRNA:   3'- -UCGUUuUACUACuuUAGACC--------------GGCCGG- -5'
10914 3' -48.2 NC_002794.1 + 128629 0.69 0.996831
Target:  5'- uGGCGAGGUacgauuccgagGAaGAGGUCUugugGGaCCGGCCg -3'
miRNA:   3'- -UCGUUUUA-----------CUaCUUUAGA----CC-GGCCGG- -5'
10914 3' -48.2 NC_002794.1 + 125723 0.68 0.998126
Target:  5'- gAGCGAAcgGGaGGAggCggaGGCgGGCCg -3'
miRNA:   3'- -UCGUUUuaCUaCUUuaGa--CCGgCCGG- -5'
10914 3' -48.2 NC_002794.1 + 111598 0.68 0.998664
Target:  5'- gAGCGGGGUGAUcuccca-GGCCGGCg -3'
miRNA:   3'- -UCGUUUUACUAcuuuagaCCGGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.