miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10914 3' -48.2 NC_002794.1 + 2318 1.13 0.011562
Target:  5'- gAGCAAAAUGAUGAAAUCUGGCCGGCCc -3'
miRNA:   3'- -UCGUUUUACUACUUUAGACCGGCCGG- -5'
10914 3' -48.2 NC_002794.1 + 3226 0.67 0.999435
Target:  5'- cAGCAAAAUGggGAAG-C-GGgCGGUCc -3'
miRNA:   3'- -UCGUUUUACuaCUUUaGaCCgGCCGG- -5'
10914 3' -48.2 NC_002794.1 + 4068 0.66 0.999631
Target:  5'- cGGCAAug-GGUGAGucuAUCucggcuuuauuguUGGCgGGCCc -3'
miRNA:   3'- -UCGUUuuaCUACUU---UAG-------------ACCGgCCGG- -5'
10914 3' -48.2 NC_002794.1 + 16715 0.66 0.999776
Target:  5'- cGCcguccGA-GGAGUCUGcGCCGGCUc -3'
miRNA:   3'- uCGuuuuaCUaCUUUAGAC-CGGCCGG- -5'
10914 3' -48.2 NC_002794.1 + 35603 0.66 0.999639
Target:  5'- gAGCGAcAUGA----AUCUGGUCaGCCu -3'
miRNA:   3'- -UCGUUuUACUacuuUAGACCGGcCGG- -5'
10914 3' -48.2 NC_002794.1 + 36896 0.68 0.998714
Target:  5'- uGCAGAGcGuccaGAGGUCgcgGcGCCGGCCc -3'
miRNA:   3'- uCGUUUUaCua--CUUUAGa--C-CGGCCGG- -5'
10914 3' -48.2 NC_002794.1 + 48059 0.66 0.999825
Target:  5'- gGGCAcgGcGcUGA----UGGCCGGCCa -3'
miRNA:   3'- -UCGUuuUaCuACUuuagACCGGCCGG- -5'
10914 3' -48.2 NC_002794.1 + 53622 0.7 0.989519
Target:  5'- cAGCGucgGAcgGAcGAGGUC-GGCCGaGCCg -3'
miRNA:   3'- -UCGU---UUuaCUaCUUUAGaCCGGC-CGG- -5'
10914 3' -48.2 NC_002794.1 + 56791 0.66 0.999811
Target:  5'- cGCAugGAAUgGGUGAccuuccuguccaccGcgCUGGCCcuGGCCg -3'
miRNA:   3'- uCGU--UUUA-CUACU--------------UuaGACCGG--CCGG- -5'
10914 3' -48.2 NC_002794.1 + 76938 0.66 0.999776
Target:  5'- cGCAccAUGAcgaccgcgGAGacgccGUCcGGCCGGCCc -3'
miRNA:   3'- uCGUuuUACUa-------CUU-----UAGaCCGGCCGG- -5'
10914 3' -48.2 NC_002794.1 + 80588 0.66 0.999842
Target:  5'- gGGCuGAcgGAcGAGAaccugacggacggacUCUGccuGCCGGCCg -3'
miRNA:   3'- -UCGuUUuaCUaCUUU---------------AGAC---CGGCCGG- -5'
10914 3' -48.2 NC_002794.1 + 89825 0.69 0.994033
Target:  5'- uGCGuccUGggGAAcgaGUCggucGGCCGGCCg -3'
miRNA:   3'- uCGUuuuACuaCUU---UAGa---CCGGCCGG- -5'
10914 3' -48.2 NC_002794.1 + 90846 0.73 0.963433
Target:  5'- gGGCGGcGUGcUGAcgaaAGUCacuuccaugUGGCCGGCCg -3'
miRNA:   3'- -UCGUUuUACuACU----UUAG---------ACCGGCCGG- -5'
10914 3' -48.2 NC_002794.1 + 92527 0.69 0.996668
Target:  5'- -cCGAGGUGcgcAUGAAGUCcaaccgcgacgaggUGGCCGGCg -3'
miRNA:   3'- ucGUUUUAC---UACUUUAG--------------ACCGGCCGg -5'
10914 3' -48.2 NC_002794.1 + 102387 0.73 0.947383
Target:  5'- cGCGAcGUGGUGGAA-CUGGUcuuccgcgacgCGGCCg -3'
miRNA:   3'- uCGUUuUACUACUUUaGACCG-----------GCCGG- -5'
10914 3' -48.2 NC_002794.1 + 104874 0.74 0.932682
Target:  5'- cAGCAGGcgcGUGAAG-CgGGCCGGCCg -3'
miRNA:   3'- -UCGUUUuacUACUUUaGaCCGGCCGG- -5'
10914 3' -48.2 NC_002794.1 + 111598 0.68 0.998664
Target:  5'- gAGCGGGGUGAUcuccca-GGCCGGCg -3'
miRNA:   3'- -UCGUUUUACUAcuuuagaCCGGCCGg -5'
10914 3' -48.2 NC_002794.1 + 114243 0.66 0.999776
Target:  5'- cGuCGAGGUGGUGAAagagcGUCUccgggGGCgGGUCg -3'
miRNA:   3'- uC-GUUUUACUACUU-----UAGA-----CCGgCCGG- -5'
10914 3' -48.2 NC_002794.1 + 119754 0.66 0.999715
Target:  5'- cGCAGcuccgGAccAGGUCgcGGCCGGCCu -3'
miRNA:   3'- uCGUUuua--CUacUUUAGa-CCGGCCGG- -5'
10914 3' -48.2 NC_002794.1 + 122574 0.71 0.98056
Target:  5'- cAGCGgcugcuggGGAUGAUGAAGgacgGGCUGGCg -3'
miRNA:   3'- -UCGU--------UUUACUACUUUaga-CCGGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.