Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10914 | 3' | -48.2 | NC_002794.1 | + | 192617 | 0.66 | 0.999825 |
Target: 5'- cGCcAGGUGcgGAcAGUC-GGgCGGCCg -3' miRNA: 3'- uCGuUUUACuaCU-UUAGaCCgGCCGG- -5' |
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10914 | 3' | -48.2 | NC_002794.1 | + | 189785 | 0.69 | 0.996012 |
Target: 5'- cGCGGGAUGcgGAAAUCgccgucgaaccccGGCgGGCg -3' miRNA: 3'- uCGUUUUACuaCUUUAGa------------CCGgCCGg -5' |
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10914 | 3' | -48.2 | NC_002794.1 | + | 178172 | 0.67 | 0.999384 |
Target: 5'- cGGCucgccuucgGAgaGAAGUCUgcGGCCGGCUg -3' miRNA: 3'- -UCGuuuua----CUa-CUUUAGA--CCGGCCGG- -5' |
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10914 | 3' | -48.2 | NC_002794.1 | + | 160961 | 0.77 | 0.833825 |
Target: 5'- cGGUcuuuGGAAUaGGUGAcucgguUCUGGCCGGCCg -3' miRNA: 3'- -UCG----UUUUA-CUACUuu----AGACCGGCCGG- -5' |
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10914 | 3' | -48.2 | NC_002794.1 | + | 150950 | 0.67 | 0.999285 |
Target: 5'- cGCuGGGUGuucGAGAUCUacgaccugcccucGGCCGGUCu -3' miRNA: 3'- uCGuUUUACua-CUUUAGA-------------CCGGCCGG- -5' |
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10914 | 3' | -48.2 | NC_002794.1 | + | 149193 | 0.73 | 0.959789 |
Target: 5'- gAGCAGAGaaacGUGAGcuAUCcGGCUGGCCg -3' miRNA: 3'- -UCGUUUUac--UACUU--UAGaCCGGCCGG- -5' |
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10914 | 3' | -48.2 | NC_002794.1 | + | 146866 | 0.67 | 0.999435 |
Target: 5'- cGCGuucGGGUGggGGGcgC-GGUCGGCCg -3' miRNA: 3'- uCGU---UUUACuaCUUuaGaCCGGCCGG- -5' |
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10914 | 3' | -48.2 | NC_002794.1 | + | 145509 | 0.71 | 0.986435 |
Target: 5'- uGCGAAggGGUGcg--CgaGGCCGGCCc -3' miRNA: 3'- uCGUUUuaCUACuuuaGa-CCGGCCGG- -5' |
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10914 | 3' | -48.2 | NC_002794.1 | + | 144745 | 0.66 | 0.999715 |
Target: 5'- cAGCAuuuccaccGGUGGuucUGGGAacgcagCUGGCCGGCg -3' miRNA: 3'- -UCGUu-------UUACU---ACUUUa-----GACCGGCCGg -5' |
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10914 | 3' | -48.2 | NC_002794.1 | + | 140958 | 0.71 | 0.982697 |
Target: 5'- cGCGGAGUGcGUGAGGU-UGGCCGaGCg -3' miRNA: 3'- uCGUUUUAC-UACUUUAgACCGGC-CGg -5' |
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10914 | 3' | -48.2 | NC_002794.1 | + | 139874 | 0.72 | 0.970015 |
Target: 5'- gAGCAGGuUGAUGcAAGUCUcggugaugcgGGCCaGCCg -3' miRNA: 3'- -UCGUUUuACUAC-UUUAGA----------CCGGcCGG- -5' |
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10914 | 3' | -48.2 | NC_002794.1 | + | 138971 | 0.7 | 0.993088 |
Target: 5'- cGGCGGAcgGGuUGGc--CUGGCgGGCCu -3' miRNA: 3'- -UCGUUUuaCU-ACUuuaGACCGgCCGG- -5' |
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10914 | 3' | -48.2 | NC_002794.1 | + | 138687 | 0.67 | 0.998944 |
Target: 5'- cGGCGGGucGUGAUGcAAAUgaGGgCGGCg -3' miRNA: 3'- -UCGUUU--UACUAC-UUUAgaCCgGCCGg -5' |
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10914 | 3' | -48.2 | NC_002794.1 | + | 132731 | 0.71 | 0.986435 |
Target: 5'- uGCAAAAUGGguccgGcgGagUGGCCGGCa -3' miRNA: 3'- uCGUUUUACUa----CuuUagACCGGCCGg -5' |
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10914 | 3' | -48.2 | NC_002794.1 | + | 129688 | 0.67 | 0.999285 |
Target: 5'- cGCGGGGUGcUGGAcaccauguggggcAUCcGGCCGGUUa -3' miRNA: 3'- uCGUUUUACuACUU-------------UAGaCCGGCCGG- -5' |
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10914 | 3' | -48.2 | NC_002794.1 | + | 128629 | 0.69 | 0.996831 |
Target: 5'- uGGCGAGGUacgauuccgagGAaGAGGUCUugugGGaCCGGCCg -3' miRNA: 3'- -UCGUUUUA-----------CUaCUUUAGA----CC-GGCCGG- -5' |
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10914 | 3' | -48.2 | NC_002794.1 | + | 127981 | 0.69 | 0.996668 |
Target: 5'- uGGUGGuGUGGUGguGUCUGGgcggacgaccgucgUCGGCCg -3' miRNA: 3'- -UCGUUuUACUACuuUAGACC--------------GGCCGG- -5' |
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10914 | 3' | -48.2 | NC_002794.1 | + | 126243 | 0.67 | 0.9993 |
Target: 5'- uGGCGAucGUGGcgcgcGAGGUCggcGGCUGGCUg -3' miRNA: 3'- -UCGUUu-UACUa----CUUUAGa--CCGGCCGG- -5' |
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10914 | 3' | -48.2 | NC_002794.1 | + | 126136 | 0.67 | 0.9993 |
Target: 5'- -------cGccGGuuUCUGGCCGGCCc -3' miRNA: 3'- ucguuuuaCuaCUuuAGACCGGCCGG- -5' |
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10914 | 3' | -48.2 | NC_002794.1 | + | 126025 | 0.66 | 0.999821 |
Target: 5'- -------cGAcGAGAUCUGGCCgaacuucGGCCu -3' miRNA: 3'- ucguuuuaCUaCUUUAGACCGG-------CCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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