miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10914 5' -62.8 NC_002794.1 + 134934 0.66 0.712292
Target:  5'- gCGGACGGGCUaucuguauguggCgaagccgcgCGaCCCCugCUUCCa -3'
miRNA:   3'- -GCCUGUCCGA------------Ga--------GC-GGGGugGGAGGc -5'
10914 5' -62.8 NC_002794.1 + 189580 0.66 0.712292
Target:  5'- cCGGccCGGGCcggCGCCCCuuaGCCCgUCCGc -3'
miRNA:   3'- -GCCu-GUCCGagaGCGGGG---UGGG-AGGC- -5'
10914 5' -62.8 NC_002794.1 + 193652 0.66 0.702942
Target:  5'- cCGGuC-GGCUCcggcgCGCCCCgACCC-CCa -3'
miRNA:   3'- -GCCuGuCCGAGa----GCGGGG-UGGGaGGc -5'
10914 5' -62.8 NC_002794.1 + 138545 0.66 0.702942
Target:  5'- uCGG-C-GGCUUuUCGCCuCCGCCCgcUCCGu -3'
miRNA:   3'- -GCCuGuCCGAG-AGCGG-GGUGGG--AGGC- -5'
10914 5' -62.8 NC_002794.1 + 71891 0.66 0.693539
Target:  5'- uGGACGcGCUCUCGCagcuCCCGcagcCCCUCg- -3'
miRNA:   3'- gCCUGUcCGAGAGCG----GGGU----GGGAGgc -5'
10914 5' -62.8 NC_002794.1 + 192350 0.66 0.693539
Target:  5'- gCGGACcucGGcCUC-CGCCgCCGCCgaCCGa -3'
miRNA:   3'- -GCCUGu--CC-GAGaGCGG-GGUGGgaGGC- -5'
10914 5' -62.8 NC_002794.1 + 307 0.66 0.693539
Target:  5'- -cGcCGGGC-C-CGCCCCACCC-CCa -3'
miRNA:   3'- gcCuGUCCGaGaGCGGGGUGGGaGGc -5'
10914 5' -62.8 NC_002794.1 + 66281 0.66 0.693539
Target:  5'- gCGGAgGGGUcCgagCGCCCguCCgUCCGc -3'
miRNA:   3'- -GCCUgUCCGaGa--GCGGGguGGgAGGC- -5'
10914 5' -62.8 NC_002794.1 + 138717 0.66 0.691653
Target:  5'- uGGACucgcgucgagccGGCUCgacgggGUCCCcgGCCCUCCGg -3'
miRNA:   3'- gCCUGu-----------CCGAGag----CGGGG--UGGGAGGC- -5'
10914 5' -62.8 NC_002794.1 + 68943 0.66 0.684092
Target:  5'- gCGGGCcgcGGCgccggCGCCUCuCCCUCCu -3'
miRNA:   3'- -GCCUGu--CCGaga--GCGGGGuGGGAGGc -5'
10914 5' -62.8 NC_002794.1 + 67445 0.66 0.684092
Target:  5'- cCGcuuCGGGCUCcCGCCCgCACUCgCCGa -3'
miRNA:   3'- -GCcu-GUCCGAGaGCGGG-GUGGGaGGC- -5'
10914 5' -62.8 NC_002794.1 + 90196 0.66 0.674608
Target:  5'- gGGGCAcGGUgcccgCGCCuCCGCCCgCCGc -3'
miRNA:   3'- gCCUGU-CCGaga--GCGG-GGUGGGaGGC- -5'
10914 5' -62.8 NC_002794.1 + 21398 0.66 0.673657
Target:  5'- uCGGACAccgccGGCuccacgaUCUCGagCCCGUCCUCCGa -3'
miRNA:   3'- -GCCUGU-----CCG-------AGAGCg-GGGUGGGAGGC- -5'
10914 5' -62.8 NC_002794.1 + 190581 0.66 0.665093
Target:  5'- aCGGGUA-GCUCUCGCgCCGCagcuCCUCCa -3'
miRNA:   3'- -GCCUGUcCGAGAGCGgGGUG----GGAGGc -5'
10914 5' -62.8 NC_002794.1 + 15005 0.66 0.665093
Target:  5'- uCGGGCGgucucggcuGGCUgCUCGUCgUCACCUUCCu -3'
miRNA:   3'- -GCCUGU---------CCGA-GAGCGG-GGUGGGAGGc -5'
10914 5' -62.8 NC_002794.1 + 134469 0.66 0.665093
Target:  5'- gGGACGGcGCUCUCGUCgCCAgaCCgcgcgacCCGg -3'
miRNA:   3'- gCCUGUC-CGAGAGCGG-GGUg-GGa------GGC- -5'
10914 5' -62.8 NC_002794.1 + 58079 0.67 0.646
Target:  5'- gGGACGGGCggcccggCGCCCgCGCUCgaCCGc -3'
miRNA:   3'- gCCUGUCCGaga----GCGGG-GUGGGa-GGC- -5'
10914 5' -62.8 NC_002794.1 + 52966 0.67 0.636436
Target:  5'- uCGGcCAGGUgCUCgGCCUCGUCCUCCu -3'
miRNA:   3'- -GCCuGUCCGaGAG-CGGGGUGGGAGGc -5'
10914 5' -62.8 NC_002794.1 + 130666 0.67 0.636436
Target:  5'- cCGGccGCGGGCUC-CGCCgCGgCCUCg- -3'
miRNA:   3'- -GCC--UGUCCGAGaGCGGgGUgGGAGgc -5'
10914 5' -62.8 NC_002794.1 + 3557 0.67 0.636436
Target:  5'- aGGAUgggGGGCggucaaUCGCCCCccaGCCCaCCGa -3'
miRNA:   3'- gCCUG---UCCGag----AGCGGGG---UGGGaGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.