miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10914 5' -62.8 NC_002794.1 + 2352 1.09 0.001082
Target:  5'- cCGGACAGGCUCUCGCCCCACCCUCCGg -3'
miRNA:   3'- -GCCUGUCCGAGAGCGGGGUGGGAGGC- -5'
10914 5' -62.8 NC_002794.1 + 71548 0.77 0.187042
Target:  5'- uGGACAGGCUCagcUGCUCCACCUgggcgaUCCGg -3'
miRNA:   3'- gCCUGUCCGAGa--GCGGGGUGGG------AGGC- -5'
10914 5' -62.8 NC_002794.1 + 141530 0.76 0.207197
Target:  5'- uGGGCGGGCUgCUCGCCgaaggcgcgaauccgCCACCCgcggCCGc -3'
miRNA:   3'- gCCUGUCCGA-GAGCGG---------------GGUGGGa---GGC- -5'
10914 5' -62.8 NC_002794.1 + 112264 0.74 0.275452
Target:  5'- gGGACcGGCgUCUCGUCCuCGgCCUCCGu -3'
miRNA:   3'- gCCUGuCCG-AGAGCGGG-GUgGGAGGC- -5'
10914 5' -62.8 NC_002794.1 + 189966 0.73 0.294151
Target:  5'- aCGGACGGGCcgcccgCUCGCCCgAcgguCCgUCCGg -3'
miRNA:   3'- -GCCUGUCCGa-----GAGCGGGgU----GGgAGGC- -5'
10914 5' -62.8 NC_002794.1 + 148894 0.73 0.300599
Target:  5'- uGGGCGGGCUCgucCGCUgucuguUCACCUUCCGc -3'
miRNA:   3'- gCCUGUCCGAGa--GCGG------GGUGGGAGGC- -5'
10914 5' -62.8 NC_002794.1 + 61767 0.72 0.334476
Target:  5'- aGGGgGGGUccUCUCGCCucccgaccgucuCCGCCCUCCc -3'
miRNA:   3'- gCCUgUCCG--AGAGCGG------------GGUGGGAGGc -5'
10914 5' -62.8 NC_002794.1 + 152303 0.72 0.334476
Target:  5'- cCGG-CGGGCUCUCGCaCUACC-UCCGu -3'
miRNA:   3'- -GCCuGUCCGAGAGCGgGGUGGgAGGC- -5'
10914 5' -62.8 NC_002794.1 + 81484 0.71 0.394289
Target:  5'- uCGGcCAGcGuCUCUcgauaccgaCGCCCCACCCUgCCGa -3'
miRNA:   3'- -GCCuGUC-C-GAGA---------GCGGGGUGGGA-GGC- -5'
10914 5' -62.8 NC_002794.1 + 13346 0.71 0.410287
Target:  5'- gGGGguGGCgg-CGCCCCucgcccggGCCCUCCu -3'
miRNA:   3'- gCCUguCCGagaGCGGGG--------UGGGAGGc -5'
10914 5' -62.8 NC_002794.1 + 113794 0.71 0.426682
Target:  5'- gCGGGCGcGCUCUCGguCCUCGCCUUCgCGg -3'
miRNA:   3'- -GCCUGUcCGAGAGC--GGGGUGGGAG-GC- -5'
10914 5' -62.8 NC_002794.1 + 38614 0.7 0.44346
Target:  5'- cCGGACGGGCg--CGUCCCgACUCgCCGg -3'
miRNA:   3'- -GCCUGUCCGagaGCGGGG-UGGGaGGC- -5'
10914 5' -62.8 NC_002794.1 + 32698 0.7 0.469305
Target:  5'- aGGcgucGCGGGCgaCUCGCCgCCACCCgUCGg -3'
miRNA:   3'- gCC----UGUCCGa-GAGCGG-GGUGGGaGGC- -5'
10914 5' -62.8 NC_002794.1 + 176211 0.69 0.504915
Target:  5'- gCGGAUggaAGGCUCgcUCGUCUCGCCCggugUCGa -3'
miRNA:   3'- -GCCUG---UCCGAG--AGCGGGGUGGGa---GGC- -5'
10914 5' -62.8 NC_002794.1 + 66391 0.69 0.514001
Target:  5'- --cGCGGGCUCcccgUCGUCCCGCCgaCCGu -3'
miRNA:   3'- gccUGUCCGAG----AGCGGGGUGGgaGGC- -5'
10914 5' -62.8 NC_002794.1 + 50814 0.69 0.514001
Target:  5'- uCGGGC--GCUCcggCGcCCCCGCCCUCgGg -3'
miRNA:   3'- -GCCUGucCGAGa--GC-GGGGUGGGAGgC- -5'
10914 5' -62.8 NC_002794.1 + 63341 0.69 0.532368
Target:  5'- gCGGACcGGUcgCUCGCCCUcucgcucccgucGCCCgcgCCGc -3'
miRNA:   3'- -GCCUGuCCGa-GAGCGGGG------------UGGGa--GGC- -5'
10914 5' -62.8 NC_002794.1 + 72446 0.69 0.532368
Target:  5'- gGGACcGGCgg-CGCCCCGCgC-CCGg -3'
miRNA:   3'- gCCUGuCCGagaGCGGGGUGgGaGGC- -5'
10914 5' -62.8 NC_002794.1 + 23629 0.69 0.532368
Target:  5'- cCGGACGcgcGGCcCUCGaCCCCcuccGCCCcCCGa -3'
miRNA:   3'- -GCCUGU---CCGaGAGC-GGGG----UGGGaGGC- -5'
10914 5' -62.8 NC_002794.1 + 52808 0.68 0.541639
Target:  5'- uCGGACGccGGCagCUCGUCCUGCCgUUCGu -3'
miRNA:   3'- -GCCUGU--CCGa-GAGCGGGGUGGgAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.