miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10914 5' -62.8 NC_002794.1 + 190094 0.67 0.636436
Target:  5'- uCGcGCA-GCUCccaCGCCCCGCCgUCCGc -3'
miRNA:   3'- -GCcUGUcCGAGa--GCGGGGUGGgAGGC- -5'
10914 5' -62.8 NC_002794.1 + 115002 0.67 0.626869
Target:  5'- gCGGAgCA-GCUCUCGCaCCCGCCgCgcgCCc -3'
miRNA:   3'- -GCCU-GUcCGAGAGCG-GGGUGG-Ga--GGc -5'
10914 5' -62.8 NC_002794.1 + 1175 0.67 0.626869
Target:  5'- uGGGCgGGGUUC-CG-CCCACCCaCCGg -3'
miRNA:   3'- gCCUG-UCCGAGaGCgGGGUGGGaGGC- -5'
10914 5' -62.8 NC_002794.1 + 62504 0.67 0.626869
Target:  5'- gCGGGCGGcGC-CgccggCGCCuCCGCCCaCCGu -3'
miRNA:   3'- -GCCUGUC-CGaGa----GCGG-GGUGGGaGGC- -5'
10914 5' -62.8 NC_002794.1 + 19415 0.67 0.617306
Target:  5'- cCGGAuCGGGCg--CGCCCU--CCUCCGc -3'
miRNA:   3'- -GCCU-GUCCGagaGCGGGGugGGAGGC- -5'
10914 5' -62.8 NC_002794.1 + 142892 0.67 0.617306
Target:  5'- gCGG-CAGGCg--UGCCCgGCguCCUCCGg -3'
miRNA:   3'- -GCCuGUCCGagaGCGGGgUG--GGAGGC- -5'
10914 5' -62.8 NC_002794.1 + 185580 0.67 0.617306
Target:  5'- aGGGCGcgcGGCUCUCcCuCCCucuguCCCUCCc -3'
miRNA:   3'- gCCUGU---CCGAGAGcG-GGGu----GGGAGGc -5'
10914 5' -62.8 NC_002794.1 + 48532 0.67 0.607752
Target:  5'- aCGcACAGGCUCgggUCGgCCgACCaCUCCGc -3'
miRNA:   3'- -GCcUGUCCGAG---AGCgGGgUGG-GAGGC- -5'
10914 5' -62.8 NC_002794.1 + 109550 0.67 0.598214
Target:  5'- gCGGACcGGUcuacCUCGCCCCccacgcgggGCCC-CCGu -3'
miRNA:   3'- -GCCUGuCCGa---GAGCGGGG---------UGGGaGGC- -5'
10914 5' -62.8 NC_002794.1 + 83885 0.67 0.598214
Target:  5'- aCGGcccCGGGCUCggCGCCCgacgagcccggCACCCUCg- -3'
miRNA:   3'- -GCCu--GUCCGAGa-GCGGG-----------GUGGGAGgc -5'
10914 5' -62.8 NC_002794.1 + 85787 0.67 0.598214
Target:  5'- gCGGAcCGGGagccaUCUUGCCUCGCUcggCUCCGc -3'
miRNA:   3'- -GCCU-GUCCg----AGAGCGGGGUGG---GAGGC- -5'
10914 5' -62.8 NC_002794.1 + 53423 0.67 0.597261
Target:  5'- gCGG-CccGCUCUCGCucgcccuCCCGCUCUCCa -3'
miRNA:   3'- -GCCuGucCGAGAGCG-------GGGUGGGAGGc -5'
10914 5' -62.8 NC_002794.1 + 78400 0.68 0.588698
Target:  5'- -cGACgAGGC-CUCGCCgCgACUCUCCGc -3'
miRNA:   3'- gcCUG-UCCGaGAGCGG-GgUGGGAGGC- -5'
10914 5' -62.8 NC_002794.1 + 46340 0.68 0.57921
Target:  5'- gCGGACGGcuccauGCUCUcccacgagacCGUCCaCGCUCUCCGg -3'
miRNA:   3'- -GCCUGUC------CGAGA----------GCGGG-GUGGGAGGC- -5'
10914 5' -62.8 NC_002794.1 + 143722 0.68 0.57921
Target:  5'- cCGG-CGGGCg-UCGUCCuCGCCCgCCGg -3'
miRNA:   3'- -GCCuGUCCGagAGCGGG-GUGGGaGGC- -5'
10914 5' -62.8 NC_002794.1 + 70344 0.68 0.57921
Target:  5'- aCGGcCGGGCgcccgCUCGUccgCCCACCCgcucgCCu -3'
miRNA:   3'- -GCCuGUCCGa----GAGCG---GGGUGGGa----GGc -5'
10914 5' -62.8 NC_002794.1 + 6956 0.68 0.569755
Target:  5'- uCGGucuCGGGC--UCGCuCCCGCUCUCCc -3'
miRNA:   3'- -GCCu--GUCCGagAGCG-GGGUGGGAGGc -5'
10914 5' -62.8 NC_002794.1 + 152099 0.68 0.569755
Target:  5'- gGGAUaccgccgucugGGGCUUgcugcgcCGCUCCGCCCUgCCGa -3'
miRNA:   3'- gCCUG-----------UCCGAGa------GCGGGGUGGGA-GGC- -5'
10914 5' -62.8 NC_002794.1 + 185291 0.68 0.560337
Target:  5'- cCGGACAGGUcagCaccacccggUCGCCCCAguguCgCCUCCa -3'
miRNA:   3'- -GCCUGUCCGa--G---------AGCGGGGU----G-GGAGGc -5'
10914 5' -62.8 NC_002794.1 + 68864 0.68 0.550964
Target:  5'- cCGGAgcuCGGGCUCgccgGCCUCGCCCguUCCc -3'
miRNA:   3'- -GCCU---GUCCGAGag--CGGGGUGGG--AGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.