miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10914 5' -62.8 NC_002794.1 + 307 0.66 0.693539
Target:  5'- -cGcCGGGC-C-CGCCCCACCC-CCa -3'
miRNA:   3'- gcCuGUCCGaGaGCGGGGUGGGaGGc -5'
10914 5' -62.8 NC_002794.1 + 1175 0.67 0.626869
Target:  5'- uGGGCgGGGUUC-CG-CCCACCCaCCGg -3'
miRNA:   3'- gCCUG-UCCGAGaGCgGGGUGGGaGGC- -5'
10914 5' -62.8 NC_002794.1 + 2352 1.09 0.001082
Target:  5'- cCGGACAGGCUCUCGCCCCACCCUCCGg -3'
miRNA:   3'- -GCCUGUCCGAGAGCGGGGUGGGAGGC- -5'
10914 5' -62.8 NC_002794.1 + 3557 0.67 0.636436
Target:  5'- aGGAUgggGGGCggucaaUCGCCCCccaGCCCaCCGa -3'
miRNA:   3'- gCCUG---UCCGag----AGCGGGG---UGGGaGGC- -5'
10914 5' -62.8 NC_002794.1 + 6956 0.68 0.569755
Target:  5'- uCGGucuCGGGC--UCGCuCCCGCUCUCCc -3'
miRNA:   3'- -GCCu--GUCCGagAGCG-GGGUGGGAGGc -5'
10914 5' -62.8 NC_002794.1 + 13346 0.71 0.410287
Target:  5'- gGGGguGGCgg-CGCCCCucgcccggGCCCUCCu -3'
miRNA:   3'- gCCUguCCGagaGCGGGG--------UGGGAGGc -5'
10914 5' -62.8 NC_002794.1 + 15005 0.66 0.665093
Target:  5'- uCGGGCGgucucggcuGGCUgCUCGUCgUCACCUUCCu -3'
miRNA:   3'- -GCCUGU---------CCGA-GAGCGG-GGUGGGAGGc -5'
10914 5' -62.8 NC_002794.1 + 19415 0.67 0.617306
Target:  5'- cCGGAuCGGGCg--CGCCCU--CCUCCGc -3'
miRNA:   3'- -GCCU-GUCCGagaGCGGGGugGGAGGC- -5'
10914 5' -62.8 NC_002794.1 + 21398 0.66 0.673657
Target:  5'- uCGGACAccgccGGCuccacgaUCUCGagCCCGUCCUCCGa -3'
miRNA:   3'- -GCCUGU-----CCG-------AGAGCg-GGGUGGGAGGC- -5'
10914 5' -62.8 NC_002794.1 + 23629 0.69 0.532368
Target:  5'- cCGGACGcgcGGCcCUCGaCCCCcuccGCCCcCCGa -3'
miRNA:   3'- -GCCUGU---CCGaGAGC-GGGG----UGGGaGGC- -5'
10914 5' -62.8 NC_002794.1 + 32698 0.7 0.469305
Target:  5'- aGGcgucGCGGGCgaCUCGCCgCCACCCgUCGg -3'
miRNA:   3'- gCC----UGUCCGa-GAGCGG-GGUGGGaGGC- -5'
10914 5' -62.8 NC_002794.1 + 38614 0.7 0.44346
Target:  5'- cCGGACGGGCg--CGUCCCgACUCgCCGg -3'
miRNA:   3'- -GCCUGUCCGagaGCGGGG-UGGGaGGC- -5'
10914 5' -62.8 NC_002794.1 + 45920 0.68 0.550964
Target:  5'- cCGGGCgacgAGGCUCgCGCuucCCCGCCCggugaCCGu -3'
miRNA:   3'- -GCCUG----UCCGAGaGCG---GGGUGGGa----GGC- -5'
10914 5' -62.8 NC_002794.1 + 46340 0.68 0.57921
Target:  5'- gCGGACGGcuccauGCUCUcccacgagacCGUCCaCGCUCUCCGg -3'
miRNA:   3'- -GCCUGUC------CGAGA----------GCGGG-GUGGGAGGC- -5'
10914 5' -62.8 NC_002794.1 + 48532 0.67 0.607752
Target:  5'- aCGcACAGGCUCgggUCGgCCgACCaCUCCGc -3'
miRNA:   3'- -GCcUGUCCGAG---AGCgGGgUGG-GAGGC- -5'
10914 5' -62.8 NC_002794.1 + 49614 0.68 0.550964
Target:  5'- gCGGGCGccGGCggcgcCUCGCCCgC-CCCUCUa -3'
miRNA:   3'- -GCCUGU--CCGa----GAGCGGG-GuGGGAGGc -5'
10914 5' -62.8 NC_002794.1 + 50814 0.69 0.514001
Target:  5'- uCGGGC--GCUCcggCGcCCCCGCCCUCgGg -3'
miRNA:   3'- -GCCUGucCGAGa--GC-GGGGUGGGAGgC- -5'
10914 5' -62.8 NC_002794.1 + 52808 0.68 0.541639
Target:  5'- uCGGACGccGGCagCUCGUCCUGCCgUUCGu -3'
miRNA:   3'- -GCCUGU--CCGa-GAGCGGGGUGGgAGGC- -5'
10914 5' -62.8 NC_002794.1 + 52966 0.67 0.636436
Target:  5'- uCGGcCAGGUgCUCgGCCUCGUCCUCCu -3'
miRNA:   3'- -GCCuGUCCGaGAG-CGGGGUGGGAGGc -5'
10914 5' -62.8 NC_002794.1 + 53423 0.67 0.597261
Target:  5'- gCGG-CccGCUCUCGCucgcccuCCCGCUCUCCa -3'
miRNA:   3'- -GCCuGucCGAGAGCG-------GGGUGGGAGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.