miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10914 5' -62.8 NC_002794.1 + 58079 0.67 0.646
Target:  5'- gGGACGGGCggcccggCGCCCgCGCUCgaCCGc -3'
miRNA:   3'- gCCUGUCCGaga----GCGGG-GUGGGa-GGC- -5'
10914 5' -62.8 NC_002794.1 + 61767 0.72 0.334476
Target:  5'- aGGGgGGGUccUCUCGCCucccgaccgucuCCGCCCUCCc -3'
miRNA:   3'- gCCUgUCCG--AGAGCGG------------GGUGGGAGGc -5'
10914 5' -62.8 NC_002794.1 + 62504 0.67 0.626869
Target:  5'- gCGGGCGGcGC-CgccggCGCCuCCGCCCaCCGu -3'
miRNA:   3'- -GCCUGUC-CGaGa----GCGG-GGUGGGaGGC- -5'
10914 5' -62.8 NC_002794.1 + 63341 0.69 0.532368
Target:  5'- gCGGACcGGUcgCUCGCCCUcucgcucccgucGCCCgcgCCGc -3'
miRNA:   3'- -GCCUGuCCGa-GAGCGGGG------------UGGGa--GGC- -5'
10914 5' -62.8 NC_002794.1 + 66281 0.66 0.693539
Target:  5'- gCGGAgGGGUcCgagCGCCCguCCgUCCGc -3'
miRNA:   3'- -GCCUgUCCGaGa--GCGGGguGGgAGGC- -5'
10914 5' -62.8 NC_002794.1 + 66391 0.69 0.514001
Target:  5'- --cGCGGGCUCcccgUCGUCCCGCCgaCCGu -3'
miRNA:   3'- gccUGUCCGAG----AGCGGGGUGGgaGGC- -5'
10914 5' -62.8 NC_002794.1 + 67445 0.66 0.684092
Target:  5'- cCGcuuCGGGCUCcCGCCCgCACUCgCCGa -3'
miRNA:   3'- -GCcu-GUCCGAGaGCGGG-GUGGGaGGC- -5'
10914 5' -62.8 NC_002794.1 + 68864 0.68 0.550964
Target:  5'- cCGGAgcuCGGGCUCgccgGCCUCGCCCguUCCc -3'
miRNA:   3'- -GCCU---GUCCGAGag--CGGGGUGGG--AGGc -5'
10914 5' -62.8 NC_002794.1 + 68943 0.66 0.684092
Target:  5'- gCGGGCcgcGGCgccggCGCCUCuCCCUCCu -3'
miRNA:   3'- -GCCUGu--CCGaga--GCGGGGuGGGAGGc -5'
10914 5' -62.8 NC_002794.1 + 70344 0.68 0.57921
Target:  5'- aCGGcCGGGCgcccgCUCGUccgCCCACCCgcucgCCu -3'
miRNA:   3'- -GCCuGUCCGa----GAGCG---GGGUGGGa----GGc -5'
10914 5' -62.8 NC_002794.1 + 71548 0.77 0.187042
Target:  5'- uGGACAGGCUCagcUGCUCCACCUgggcgaUCCGg -3'
miRNA:   3'- gCCUGUCCGAGa--GCGGGGUGGG------AGGC- -5'
10914 5' -62.8 NC_002794.1 + 71891 0.66 0.693539
Target:  5'- uGGACGcGCUCUCGCagcuCCCGcagcCCCUCg- -3'
miRNA:   3'- gCCUGUcCGAGAGCG----GGGU----GGGAGgc -5'
10914 5' -62.8 NC_002794.1 + 72446 0.69 0.532368
Target:  5'- gGGACcGGCgg-CGCCCCGCgC-CCGg -3'
miRNA:   3'- gCCUGuCCGagaGCGGGGUGgGaGGC- -5'
10914 5' -62.8 NC_002794.1 + 78400 0.68 0.588698
Target:  5'- -cGACgAGGC-CUCGCCgCgACUCUCCGc -3'
miRNA:   3'- gcCUG-UCCGaGAGCGG-GgUGGGAGGC- -5'
10914 5' -62.8 NC_002794.1 + 81484 0.71 0.394289
Target:  5'- uCGGcCAGcGuCUCUcgauaccgaCGCCCCACCCUgCCGa -3'
miRNA:   3'- -GCCuGUC-C-GAGA---------GCGGGGUGGGA-GGC- -5'
10914 5' -62.8 NC_002794.1 + 83885 0.67 0.598214
Target:  5'- aCGGcccCGGGCUCggCGCCCgacgagcccggCACCCUCg- -3'
miRNA:   3'- -GCCu--GUCCGAGa-GCGGG-----------GUGGGAGgc -5'
10914 5' -62.8 NC_002794.1 + 85787 0.67 0.598214
Target:  5'- gCGGAcCGGGagccaUCUUGCCUCGCUcggCUCCGc -3'
miRNA:   3'- -GCCU-GUCCg----AGAGCGGGGUGG---GAGGC- -5'
10914 5' -62.8 NC_002794.1 + 90196 0.66 0.674608
Target:  5'- gGGGCAcGGUgcccgCGCCuCCGCCCgCCGc -3'
miRNA:   3'- gCCUGU-CCGaga--GCGG-GGUGGGaGGC- -5'
10914 5' -62.8 NC_002794.1 + 109550 0.67 0.598214
Target:  5'- gCGGACcGGUcuacCUCGCCCCccacgcgggGCCC-CCGu -3'
miRNA:   3'- -GCCUGuCCGa---GAGCGGGG---------UGGGaGGC- -5'
10914 5' -62.8 NC_002794.1 + 112264 0.74 0.275452
Target:  5'- gGGACcGGCgUCUCGUCCuCGgCCUCCGu -3'
miRNA:   3'- gCCUGuCCG-AGAGCGGG-GUgGGAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.